BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0083.p
         (408 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309913|ref|YP_003774005.1| hypothetical protein Hsero_0578...   545   e-156

>gi|300309913|ref|YP_003774005.1| hypothetical protein Hsero_0578
           [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score =  545 bits (1404), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 258/409 (63%), Positives = 315/409 (77%), Gaps = 4/409 (0%)

Query: 1   MAELKKASYFQPQKGLFGVELKEFKGVRGCIPLDTPTGVSIDRLPPGVKPPSPPNHTTGS 60
           MA++KKA Y+  QKGLFG +LKEF  +RGCIPL+TP G++IDR  PGVKPP P    T  
Sbjct: 1   MADVKKAPYYHLQKGLFGSKLKEFSAIRGCIPLNTPRGIAIDRAAPGVKPPPPIPTATAE 60

Query: 61  KKAEKQTRGQPPAQQSKTPQAKARRKTIPTELEFEVCENPPAFDLQDVPFAMDKLGWTVS 120
           K    Q R  PP        ++ ++K  P +LE EVC+NPP FDLQDVP AMD LGWTVS
Sbjct: 61  KT---QERSAPPQDIQNPKASQQKKKAQPEQLEVEVCDNPPIFDLQDVPVAMDNLGWTVS 117

Query: 121 AKLARAWFSRAAHIFNDDPRSEQPLNDSVVTLDWALRFGSVRKKYEKFLTSDIYTLRAVG 180
           AKLAR WFS  AHI++++P+S QP+ND+ VTL+W L+FG V+KKYE+ L+ DIY   AV 
Sbjct: 118 AKLARRWFSGPAHIYDNNPKSIQPINDTDVTLEWVLKFGIVKKKYEELLSKDIYNAAAVD 177

Query: 181 ATTDAVKSFVRQLF-ESGNSNLSVDTSQFLGDLRNFHADWQFQKLTISDGDTFNGLTLTD 239
           +    + + +R+ F E   ++LS +TSQ L DL  FH DWQFQ  ++SDGDTF+G TLTD
Sbjct: 178 SAKQKILTRIRKRFSEERTNDLSFNTSQSLTDLLQFHIDWQFQLSSLSDGDTFDGFTLTD 237

Query: 240 LTGSLANFNIYAAVGNVEISTEKYFRYERGRTLYCLNAIGKITHIYVYVKDNYSFNGKQY 299
           LTG+LANFNIY AVG+V+IS EKYFRYE+ ++LYCL+A+G ITH+Y YVKDNYSFNG+QY
Sbjct: 238 LTGALANFNIYVAVGSVDISGEKYFRYEKSKSLYCLDAVGTITHVYAYVKDNYSFNGEQY 297

Query: 300 LGHWNKHGIVIAPGTWLTGSSSSKKDTDIDIWLKAINKPVDTRKGVFGKFKEPDVYFPVF 359
           LGHWN+HGI+IAPGTWL GS+  K+D DIDIW+KAINKPVDTR+  F  F+E DVYFPVF
Sbjct: 298 LGHWNRHGIIIAPGTWLIGSNKPKRDLDIDIWVKAINKPVDTRRSFFANFRESDVYFPVF 357

Query: 360 NADYNRWREKHQRGGDFMVYSKPVHLKLKTPIDLKLGEICRPESLSSLG 408
           NADYNRWREKH RG DFM+YSKPV+LKLK PI  KLGEICR E L+SL 
Sbjct: 358 NADYNRWREKHDRGQDFMIYSKPVYLKLKKPIVFKLGEICRLEPLNSLA 406


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,278,987
Number of extensions: 51719
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 321
Effective length of database: 1,207,925
Effective search space: 387743925
Effective search space used: 387743925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)