BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0081.p
         (508 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132...  1035   0.0  

>gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132
           [Herbaspirillum seropedicae SmR1]
          Length = 574

 Score = 1035 bits (2677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/508 (100%), Positives = 508/508 (100%)

Query: 1   MARARCLLTLALLGLLAGQLPAAHAAAPTPAAAPLSEQERALHVLNRLAYGPRPGDLEEV 60
           MARARCLLTLALLGLLAGQLPAAHAAAPTPAAAPLSEQERALHVLNRLAYGPRPGDLEEV
Sbjct: 67  MARARCLLTLALLGLLAGQLPAAHAAAPTPAAAPLSEQERALHVLNRLAYGPRPGDLEEV 126

Query: 61  ERMGVKRYIDQQLHPERIPLPAQLQASLAALPGLQMTPAQLFVDYGPPSFDKEGSKEEKQ 120
           ERMGVKRYIDQQLHPERIPLPAQLQASLAALPGLQMTPAQLFVDYGPPSFDKEGSKEEKQ
Sbjct: 127 ERMGVKRYIDQQLHPERIPLPAQLQASLAALPGLQMTPAQLFVDYGPPSFDKEGSKEEKQ 186

Query: 121 AARQRAPRELTPQFHMARLLQATESPRQLEEVMTEFWANHFNVFEGKEWVRYWVGDYEKN 180
           AARQRAPRELTPQFHMARLLQATESPRQLEEVMTEFWANHFNVFEGKEWVRYWVGDYEKN
Sbjct: 187 AARQRAPRELTPQFHMARLLQATESPRQLEEVMTEFWANHFNVFEGKEWVRYWVGDYEKN 246

Query: 181 AIRPYALGNFRDLLGAVAHHPAMLYYLDNWLSSGAGTRGARGRFKGLNENYARELMELHT 240
           AIRPYALGNFRDLLGAVAHHPAMLYYLDNWLSSGAGTRGARGRFKGLNENYARELMELHT
Sbjct: 247 AIRPYALGNFRDLLGAVAHHPAMLYYLDNWLSSGAGTRGARGRFKGLNENYARELMELHT 306

Query: 241 LGVDGGYQQADVITLARILSGWTIDVNAMKAGAAPFSFAAQRHDPSPKVFLGKPLAATGY 300
           LGVDGGYQQADVITLARILSGWTIDVNAMKAGAAPFSFAAQRHDPSPKVFLGKPLAATGY
Sbjct: 307 LGVDGGYQQADVITLARILSGWTIDVNAMKAGAAPFSFAAQRHDPSPKVFLGKPLAATGY 366

Query: 301 QEGEAALDILANHPATARFISTQLVQYFVSDQPDPALVQKLSQTFLSTHGDLRAVLKTLF 360
           QEGEAALDILANHPATARFISTQLVQYFVSDQPDPALVQKLSQTFLSTHGDLRAVLKTLF
Sbjct: 367 QEGEAALDILANHPATARFISTQLVQYFVSDQPDPALVQKLSQTFLSTHGDLRAVLKTLF 426

Query: 361 DSPQFWARSNYQTQFKTPYQFVVSALRASDIPVRNAKPVNGALAQFGMPLYGWLTPEGYK 420
           DSPQFWARSNYQTQFKTPYQFVVSALRASDIPVRNAKPVNGALAQFGMPLYGWLTPEGYK
Sbjct: 427 DSPQFWARSNYQTQFKTPYQFVVSALRASDIPVRNAKPVNGALAQFGMPLYGWLTPEGYK 486

Query: 421 YSQAAWLNPDALLRRINFAGNLVNGKSPIARPEGEAPPSNADARPVDAQQLLRTLGPAVA 480
           YSQAAWLNPDALLRRINFAGNLVNGKSPIARPEGEAPPSNADARPVDAQQLLRTLGPAVA
Sbjct: 487 YSQAAWLNPDALLRRINFAGNLVNGKSPIARPEGEAPPSNADARPVDAQQLLRTLGPAVA 546

Query: 481 PQTAAKILAAPENVQAGLILGSPDFMKR 508
           PQTAAKILAAPENVQAGLILGSPDFMKR
Sbjct: 547 PQTAAKILAAPENVQAGLILGSPDFMKR 574


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,544,135
Number of extensions: 64222
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 419
Effective length of database: 1,198,455
Effective search space: 502152645
Effective search space used: 502152645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)