BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0079.p (225 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312430|ref|YP_003776522.1| sensor histidine kinase [Herbas... 446 e-127 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 65 3e-12 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 63 2e-11 gi|300311034|ref|YP_003775126.1| chemotaxis response regulator p... 59 2e-10 gi|300309955|ref|YP_003774047.1| two-component system sensor his... 56 3e-09 >gi|300312430|ref|YP_003776522.1| sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 446 bits (1147), Expect = e-127, Method: Compositional matrix adjust. Identities = 223/225 (99%), Positives = 225/225 (100%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA Sbjct: 9 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 68 Query: 61 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWCD 120 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWCD Sbjct: 69 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWCD 128 Query: 121 HECGDEGAALPPREEYARDLARLFLSTSQHDLAALQQAHRAGDQATMGKLAHRMKGAALT 180 HECGDEGAALPPREEYARDLARLFLSTSQHDLAALQQAHRAGDQATMGKLAHRMKGAALT Sbjct: 129 HECGDEGAALPPREEYARDLARLFLSTSQHDLAALQQAHRAGDQATMGKLAHRMKGAALT 188 Query: 181 MQRSEIVALLECLEEAMQDDYDTQDAITLLLTSLEKVLAASAAPG 225 MQRSEIVALLECLEEAMQDDYDTQDAI+LLL+SLEKVLAASAAPG Sbjct: 189 MQRSEIVALLECLEEAMQDDYDTQDAISLLLSSLEKVLAASAAPG 233 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 65.5 bits (158), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 L+ +D+ R ++ L GC +Q +G A+ AIR LVL+DC +P + G++ Sbjct: 645 LMAEDTEINRQLLRILLARKGCILQEVENGLQAVEAIRTGHYDLVLMDCMMPIMDGYQAT 704 Query: 61 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLW 118 ++RA E P TP+I ++A A + CLD GMD L KP L + + W Sbjct: 705 AEIRAHEAAR-GLPRTPIIALTASAIEGDRQRCLDAGMDDYLSKPFTQVGLMQTVEKW 761 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 LLV+D+ + +L ++G +AA+G AL + LVL+DC +P L G+E Sbjct: 479 LLVEDNVMNQKVAVYQLNAMGYAADIAANGLEALERLARHRYALVLMDCQMPLLDGYETT 538 Query: 61 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLW 118 R++R ++ E +T ++ ++A A A CL+ GMD L KP+ + L ML+ + Sbjct: 539 RRIRRMQGE---LAHTTIVAMTANAMAGDRERCLEAGMDDYLTKPLLRSQLSAMLAHY 593 >gi|300311034|ref|YP_003775126.1| chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 126 Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 7/117 (5%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRA--QPQGLVLLDCFLPDLPGHE 58 LVDDSAT+ ++++ L+ G V A DG AL ++A +P L++ D +P++ G E Sbjct: 8 FLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPD-LLITDINMPNMDGLE 66 Query: 59 VARQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKML 115 + R VRAL P + P++ ++ E+ + G G L KPV ADL K++ Sbjct: 67 LIRNVRAL----PGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIV 119 >gi|300309955|ref|YP_003774047.1| two-component system sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 122 Score = 55.8 bits (133), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 4/107 (3%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 L+VDDS ++R + L+S G V+ AADG ALA + + LV+ D +P L G Sbjct: 6 LIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLDGLSFV 65 Query: 61 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQ 107 R+++ + P +TP+I ++ E+ A + G+ + KP Q Sbjct: 66 REMKQM----PAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQ 108 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 659,809 Number of extensions: 25927 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 7 Length of query: 225 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 143 Effective length of database: 1,231,600 Effective search space: 176118800 Effective search space used: 176118800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)