BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0072.p (579 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312424|ref|YP_003776516.1| methyl-accepting chemotaxis sen... 1039 0.0 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 372 e-104 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 371 e-104 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 352 4e-98 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 347 1e-96 >gi|300312424|ref|YP_003776516.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 531 Score = 1039 bits (2686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/531 (98%), Positives = 526/531 (99%) Query: 49 MLGFSILILFMAALGGTSLYIMGKINTQLVDVQGNWMPSVTTAQTMLAEMRAVNLAQYRA 108 MLGFSILILFMAALGGTSLYIMGKIN QLVDVQGNWMPSVTTAQTMLAEMRAVNLAQYRA Sbjct: 1 MLGFSILILFMAALGGTSLYIMGKINAQLVDVQGNWMPSVTTAQTMLAEMRAVNLAQYRA 60 Query: 109 LTADNAQRMQDARTRITAALGRYTKASEQYRHLISSPAEQSAYDELQVLLARYIQIGDQL 168 LTADNAQRMQDARTRITAALGRYTKASEQYRHLISSPAEQSAYDELQ LLARYIQIGDQL Sbjct: 61 LTADNAQRMQDARTRITAALGRYTKASEQYRHLISSPAEQSAYDELQALLARYIQIGDQL 120 Query: 169 LQSVEQGKEEEAANTMKDTLYPVRTAMEAKIQQIIKINQEGAAQAVEHGQASYAQSHLTI 228 QSVEQGKEEEAANTMKDTLYPVRTAMEAKIQQIIKINQEGAAQAVEHGQASYAQSHLTI Sbjct: 121 PQSVEQGKEEEAANTMKDTLYPVRTAMEAKIQQIIKINQEGAAQAVEHGQASYAQSHLTI 180 Query: 229 IAFTLAAALAGLGIALLISRRLTRQLGGEPGEAMWLSGQIAAGNLAARLELKSNDNGSLM 288 IAFTLAAALAGLGIALLISRRLTRQLGGEPGEAMWLSGQIAAGNLAARLELKSNDNGSLM Sbjct: 181 IAFTLAAALAGLGIALLISRRLTRQLGGEPGEAMWLSGQIAAGNLAARLELKSNDNGSLM 240 Query: 289 RSLMIMRDQLSGLVGQIQHASTSIHVAAQEIAQGNIDLSQRTEEQAASLEETASSMEELT 348 RSLMIMRDQLSGLVGQIQHASTSIHVAAQEIAQGNIDLSQRTEEQAASLEETASSMEELT Sbjct: 241 RSLMIMRDQLSGLVGQIQHASTSIHVAAQEIAQGNIDLSQRTEEQAASLEETASSMEELT 300 Query: 349 STVQQNAGNAKQASGMASAGAEVARRGEAEIADVVATMREMSVSSHQMSDIISVIEGISF 408 STVQQNAGNAKQAS MASAGAEVARRGEAEIADVVATMREMSVSSHQMSDIISVIEGISF Sbjct: 301 STVQQNAGNAKQASSMASAGAEVARRGEAEIADVVATMREMSVSSHQMSDIISVIEGISF 360 Query: 409 QTNILALNAAVEAARAGENGRGFAVVASEVRALAQRTSAAAKEIKDLIEDSVGRIRNGSQ 468 QTNILALNAAVEAARAGENGRGFAVVASEVRALAQR+SAAAKEIKDLIEDSVGRIRNGSQ Sbjct: 361 QTNILALNAAVEAARAGENGRGFAVVASEVRALAQRSSAAAKEIKDLIEDSVGRIRNGSQ 420 Query: 469 LVEAAGATIAEIMQSSVRTTHLMKEIAAASEEQSAGIGQVNTAIVQMDQVTQQNAALVEE 528 LVEAAGATIAEIMQSSVRTT LMKEIAAASEEQSAGIGQVNTAIVQMDQVTQQNAALVEE Sbjct: 421 LVEAAGATIAEIMQSSVRTTDLMKEIAAASEEQSAGIGQVNTAIVQMDQVTQQNAALVEE 480 Query: 529 AAAAAQSMMQQAQALTAAVSVFKLDDQALRTLPGMPAAPQLGRSLATPALS 579 AAAAAQSMMQQAQALTAAVSVFKLDDQALRTLPGMPAAPQLGRSLATPALS Sbjct: 481 AAAAAQSMMQQAQALTAAVSVFKLDDQALRTLPGMPAAPQLGRSLATPALS 531 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 372 bits (954), Expect = e-104, Method: Compositional matrix adjust. Identities = 234/514 (45%), Positives = 343/514 (66%), Gaps = 7/514 (1%) Query: 41 NTKVATQLMLGFSILILFMAALGGTSLYIMGKINTQLVDVQGNWMPSVTTAQTMLAEMRA 100 N K+A +L++ F+ +I+ LG ++ + +N D+ NW+P++ AQ++ A + Sbjct: 6 NLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQASLPR 65 Query: 101 VNLAQYRALTADNAQRMQDARTRITAALGRYTKASEQYRHLISSPAEQSAYDELQVLLAR 160 + +++ + +TA +DA I + L K Y IS E+ Y++ A Sbjct: 66 MRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFSKSFAT 125 Query: 161 YIQIGDQLLQSVEQGKEEEAANTMK-DTLYPVRTAMEAKIQQIIKINQEGAAQAVEHGQA 219 Y++I +L + +GKEEEA K D+ R+ +E + +IIK+N G+ ++ + + Sbjct: 126 YLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIE-NMDEIIKVNDAGSKRSDDMAEQ 184 Query: 220 SYAQSHLTIIAFTLAAALAGLGIALLISRRLTRQLGGEPGEAMWLSGQIAAGNLAARLEL 279 Y + L II A + LG+A++++R ++R L EA+ ++ ++A G+L + Sbjct: 185 VYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLN----EAVAVAERVAQGDLTMDIRA 240 Query: 280 KSND-NGSLMRSLMIMRDQLSGLVGQIQHASTSIHVAAQEIAQGNIDLSQRTEEQAASLE 338 S D G LM SL M D L +VG+++ + +I A+QEIA GN+DLS RTEEQA SLE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 339 ETASSMEELTSTVQQNAGNAKQASGMASAGAEVARRGEAEIADVVATMREMSVSSHQMSD 398 ETAS+MEELT+TV+QNA NA+QA+ +A++ +++A +G A + VV TM ++ SS++++D Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 399 IISVIEGISFQTNILALNAAVEAARAGENGRGFAVVASEVRALAQRTSAAAKEIKDLIED 458 IISVI+GI+FQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQR+++AAKEIK LI+D Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 459 SVGRIRNGSQLVEAAGATIAEIMQSSVRTTHLMKEIAAASEEQSAGIGQVNTAIVQMDQV 518 SV ++ GSQLVE AGAT++E++ S R T ++ EI+AAS EQS GI ++N AI QMD+V Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 519 TQQNAALVEEAAAAAQSMMQQAQALTAAVSVFKL 552 TQQNAALVEEAAAAAQS+ QA L+ VSVFKL Sbjct: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 371 bits (953), Expect = e-104, Method: Compositional matrix adjust. Identities = 235/528 (44%), Positives = 355/528 (67%), Gaps = 12/528 (2%) Query: 41 NTKVATQLMLGFSILILFMAALGGTSLYIMGKINTQLVDVQGNWMPSVTTAQTMLAEMRA 100 + +++ +L+ F +++ +AALG S+ + ++N+ ++ NW+PS+ T + M Sbjct: 6 DLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQLAMSR 65 Query: 101 VNLAQYRALTADNAQRMQDARTRITAALGRYTKASEQYRHLISSPAEQSAYDELQVLLAR 160 + + + + A +A+ ++ + + A +Y IS P E++ Y E++ L+A Sbjct: 66 LRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVEKLIAT 125 Query: 161 YIQIGDQLLQSVEQGKEEEAANTMK-DTLYPVRTAMEAKIQQIIKINQEGAAQAVEHGQA 219 ++ D+++ QGK+EEA N + ++ RT+++ +I ++ +N +GA + + A Sbjct: 126 FVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQ-QIDKLAAVNDKGADISNKQADA 184 Query: 220 SYAQSHLTIIAFTLAAALAGLGIALLISRRLTRQLGGEPGEAMWLSGQIAAGNLAARLEL 279 YAQ+ L II T+AA + G+A+L++ ++R + EA+ ++ ++A G+L R+E Sbjct: 185 IYAQARLWII-VTVAACI---GLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 280 KSND-NGSLMRSLMIMRDQLSGLVGQIQHASTSIHVAAQEIAQGNIDLSQRTEEQAASLE 338 D G L+ +L M D L G+VGQ++ + +I A+ EIA GN+DLS RTEEQA+SLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 339 ETASSMEELTSTVQQNAGNAKQASGMASAGAEVARRGEAEIADVVATMREMSVSSHQMSD 398 ETAS+MEELTSTV+QNA NA+QA+ +A + +EVA +G A + VV TM ++ SS +++D Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 399 IISVIEGISFQTNILALNAAVEAARAGENGRGFAVVASEVRALAQRTSAAAKEIKDLIED 458 II VI+GI+FQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQR++ AAKEIK+LIE Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 459 SVGRIRNGSQLVEAAGATIAEIMQSSVRTTHLMKEIAAASEEQSAGIGQVNTAIVQMDQV 518 SV ++ GS+LVE AG T++E++QS R T ++ EI++AS+EQS GI QVN AI QMD+V Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 519 TQQNAALVEEAAAAAQSMMQQAQALTAAVSVFKLDDQALRTLPGMPAA 566 TQQNAALVEEAAAAAQS+ +QA+ LT V FKL+ Q P PA+ Sbjct: 481 TQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQ-----PDEPAS 523 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 352 bits (904), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 248/557 (44%), Positives = 341/557 (61%), Gaps = 41/557 (7%) Query: 41 NTKVATQLMLGFSILILFMAALGGTSLYIMGKIN---TQLVDVQGNWMPSVTTAQTMLAE 97 N KV T+L LGF ++++F+ ++ LY M ++N T + DV + VT + L++ Sbjct: 3 NLKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQ 62 Query: 98 MRAVNLAQYRALTADNAQRMQDARTRITAALGRYTK-ASEQYRHLISSPAEQSAYDELQV 156 RA+ + AL + A +++T L R K ++ Y L ++A E + Sbjct: 63 -RALAIRNI-ALLDEQADMQVESQT-----LARQEKLYADAYAALDKMFTTEAATTERER 115 Query: 157 LLARYIQIGDQ-------LLQSVEQGKEEEAANTMKDTLYPVRTAMEAKIQQII------ 203 L +QI + + ++V+ G E +AA K + VR +A I+ + Sbjct: 116 QL--LVQIKNDEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFE 173 Query: 204 -KINQEGAAQAVEHGQASYAQSHLTIIAFTLAAALAGLGIALLISRRLTRQLGGEPGEAM 262 ++N E A A + +YA + +A LAA L G+ + LI+R + RQLG EP EA Sbjct: 174 DQLNDEAATSA----RNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQ 229 Query: 263 WLSGQIAAGNLAARLELKSNDNGSLMRSLMIMRDQLSGLVGQIQHASTSIHVAAQEIAQG 322 ++ IA+G+L A + ++ D+ SLM S+ MR QL+ + I+ A+ +I VA+ +IAQG Sbjct: 230 AVARDIASGDLTATVRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQG 289 Query: 323 NIDLSQRTEEQAASLEETASSMEELTSTVQQNAGNAKQASGMASAGAEVARRGEAEIADV 382 N DLSQRTEEQAASLEETA+SMEELT+TV+QN +A +A ++ E A G V Sbjct: 290 NFDLSQRTEEQAASLEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRV 349 Query: 383 VATMREMSVSSHQMSDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVASEVRALA 442 V TM ++ SS +MSDIISVIEGI+FQTNILALNAAVEAARAGE GRGFAVVASEVR+LA Sbjct: 350 VQTMDRITASSSKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 409 Query: 443 QRTSAAAKEIKDLIEDSVGRIRNGSQLVEAAGATIAEIMQSSVRTTHLMKEIAAASEEQS 502 QR++ AAKEIK+LI +S+ + GSQLV AG +A+I+ S R +M IA A++EQ Sbjct: 410 QRSAVAAKEIKELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQG 469 Query: 503 AGIGQVNTAIVQMDQVTQQNAALVEEAAAAAQSMMQQAQALTAAVSVFK----------L 552 +GI Q+NTA+VQMDQVTQQNAALVEEA+AAAQS+ QQA L VSVFK L Sbjct: 470 SGIEQINTAMVQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRQDRSLAAPL 529 Query: 553 DDQALRTLPGMPAAPQL 569 + AL PGMP P L Sbjct: 530 EQAALTRTPGMPGMPAL 546 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 347 bits (891), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 228/546 (41%), Positives = 340/546 (62%), Gaps = 14/546 (2%) Query: 41 NTKVATQLMLGFSILILFMAALGGTSLYIMGKINTQLVDVQGNWMPSVTTAQTM---LAE 97 N K+A +L F ++++F+ LGG S + +N D+ NW+PS+ M LA Sbjct: 6 NLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMSLALAR 65 Query: 98 MRAVNLAQYRALTADNAQRMQDARTRITAALGRYTKASEQYRHLISSPAEQSAYDELQVL 157 R+ ++ Q LTAD Q + +R R + K +Y L+S P E+ Y E++ Sbjct: 66 SRSFDMQQL--LTADK-QEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIERN 122 Query: 158 LARYIQIGDQLLQSVEQGKEEEAANTMKDTLYPVRTAMEAKIQQIIKINQEGAAQAVEHG 217 +A Y + +++ EQ +++ A M T PV ++ +I ++ ++N +GAA + Sbjct: 123 IALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDADA 182 Query: 218 QASYAQSHLTIIAFTLAAALAGLGIALLISRRLTRQLGGEPGEAMWLSGQIAAGNLAARL 277 Y Q+++ I+A + + ++ I+R + R L A+ ++ Q+AAG+L A + Sbjct: 183 DHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLAN----AVDIARQVAAGDLTADI 238 Query: 278 ELKSND-NGSLMRSLMIMRDQLSGLVGQIQHASTSIHVAAQEIAQGNIDLSQRTEEQAAS 336 D G L+ +L M L +V +++ + +I A+ EIA GN+DLS RTE+QA + Sbjct: 239 PTAHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGA 298 Query: 337 LEETASSMEELTSTVQQNAGNAKQASGMASAGAEVARRGEAEIADVVATMREMSVSSHQM 396 LEETAS+MEELTSTV+QN+ NA+QA+ +A +EVA+ G + VVATM ++ SS ++ Sbjct: 299 LEETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKI 358 Query: 397 SDIISVIEGISFQTNILALNAAVEAARAGENGRGFAVVASEVRALAQRTSAAAKEIKDLI 456 DII VI+GI+FQTNILALNAAVEAARAGE GRGFAVVASEVR LAQR++AAA EIK LI Sbjct: 359 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALI 418 Query: 457 EDSVGRIRNGSQLVEAAGATIAEIMQSSVRTTHLMKEIAAASEEQSAGIGQVNTAIVQMD 516 +DSV ++ GS+LV+ AG T+ E++ S R + ++ EI AA EQ+ GI Q+N A+VQMD Sbjct: 419 DDSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMD 478 Query: 517 QVTQQNAALVEEAAAAAQSMMQQAQALTAAVSVFKLDDQALRTLPGMPAA---PQLGRSL 573 + TQQNAALVE+AAAAA+++ +QA L+ VSVF+LD Q + + AA P+ + Sbjct: 479 ENTQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVVVSRAAATAQPERDITP 538 Query: 574 ATPALS 579 A PAL+ Sbjct: 539 ARPALA 544 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.124 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,297,513 Number of extensions: 41154 Number of successful extensions: 593 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 318 Number of HSP's successfully gapped: 71 Length of query: 579 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 489 Effective length of database: 1,193,720 Effective search space: 583729080 Effective search space used: 583729080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)