BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0068.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate ph...   603   e-174
gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillu...    93   3e-20

>gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate
           phosphonomutase [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score =  603 bits (1555), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 4   MALHSAGAAFRKAVQEESPLQVIGAINANHALLAKRAGFRAIYLSGGGVAAGSLGLPDLG 63
           MALHSAGAAFRKAVQEESPLQVIGAINANHALLAKRAGFRAIYLSGGGVAAGSLGLPDLG
Sbjct: 1   MALHSAGAAFRKAVQEESPLQVIGAINANHALLAKRAGFRAIYLSGGGVAAGSLGLPDLG 60

Query: 64  ISNLDDVLTDVRRITDVCDLPLLVDVDTGFGASAFNVARTVKSMIKFGAAAMHIEDQVGA 123
           ISNLDDVLTDVRRITDVCDLPLLVDVDTGFGASAFNVARTVKSMIKFGAAAMHIEDQVGA
Sbjct: 61  ISNLDDVLTDVRRITDVCDLPLLVDVDTGFGASAFNVARTVKSMIKFGAAAMHIEDQVGA 120

Query: 124 KRCGHRPNKEIVSKQEMVDRIKAAVDARTDENFVIMARTDALAVEGLDAAIERAVACVEA 183
           KRCGHRPNKEIVSKQEMVDRIKAAVDARTDENFVIMARTDALAVEGLDAAIERAVACVEA
Sbjct: 121 KRCGHRPNKEIVSKQEMVDRIKAAVDARTDENFVIMARTDALAVEGLDAAIERAVACVEA 180

Query: 184 GADMIFPEAITDLAMYKQFANAVKVPILANITEFGSTPLFTVDELKGADVGLVLYPLSAF 243
           GADMIFPEAITDLAMYKQFANAVKVPILANITEFGSTPLFTVDELKGADVGLVLYPLSAF
Sbjct: 181 GADMIFPEAITDLAMYKQFANAVKVPILANITEFGSTPLFTVDELKGADVGLVLYPLSAF 240

Query: 244 RAMNKAAENVYQAIRRDGTQKNVVDTMQTRMELYDRIDYHSYEQRLDALFAQQKNK 299
           RAMNKAAENVYQAIRRDGTQKNVVDTMQTRMELYDRIDYHSYEQRLDALFAQQKNK
Sbjct: 241 RAMNKAAENVYQAIRRDGTQKNVVDTMQTRMELYDRIDYHSYEQRLDALFAQQKNK 296


>gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillum
           seropedicae SmR1]
          Length = 434

 Score = 92.8 bits (229), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 129/312 (41%), Gaps = 72/312 (23%)

Query: 17  VQEESPLQVIGAINANHALLAKRAGFRAIYLSGGGVA-----AGSLGLPDLGISNLDDVL 71
           V  E  +  +GA+  N A+   +AG +AIYLSG  VA     AG +  PD  +   + V 
Sbjct: 58  VNNEPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEM-YPDQSLYPANSVP 116

Query: 72  TDVRRIT---------------DVCDL--PLLVDVDTGFGASAFNVARTVKSMIKFGAAA 114
             V+RI                D  D   P++ D + GFG    N    +KSMI+ GAA 
Sbjct: 117 MVVKRINNTFARADQIQWSEGKDDIDFFAPIVADAEAGFGG-VLNAFELMKSMIEAGAAG 175

Query: 115 MHIEDQVGA-KRCGHRPNKEIVSKQEMVDRIKA---AVDARTDENFVIMARTDALAVE-- 168
           +H EDQ+ + K+CGH   K +V  +E V+++ A   A D    +  VI ARTDA A +  
Sbjct: 176 VHFEDQLASVKKCGHMGGKVLVPTREAVEKLNAARLAADVMGTKTLVI-ARTDAEAADLL 234

Query: 169 --------------------------GLDAAIERAVACVEAGADMIFPE-AITDLAMYKQ 201
                                     G+D AI R +A  E  ADM++ E    DLA  K 
Sbjct: 235 TSDVDANDKPFLSGERTVEGFFKTHPGIDQAISRGLAYAEY-ADMVWCETGKPDLAFAKT 293

Query: 202 FANAVKVPILANITEFGSTPLFTVD-------------ELKGADVGLVLYPLSAFRAMNK 248
           FA A+       +  +  +P F                EL           L+ F A+N 
Sbjct: 294 FAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHALNY 353

Query: 249 AAENVYQAIRRD 260
           +  N+     R+
Sbjct: 354 SMFNLAHGYARN 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 733,947
Number of extensions: 25603
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)