BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0057.p (366 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 739 0.0 gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 127 2e-30 gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 117 1e-27 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/366 (99%), Positives = 364/366 (99%) Query: 1 MSISSQNSDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRAGAGLIIA 60 MSISSQNSDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRAGAGLIIA Sbjct: 1 MSISSQNSDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRAGAGLIIA 60 Query: 61 EATQISPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGRISHPDLQPGH 120 EATQISPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGRISHPDLQPGH Sbjct: 61 EATQISPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGRISHPDLQPGH 120 Query: 121 ALPVAPSAVQPEGQAFTESGFKPFVTPRALEAAELPAIVAQYKKAAQLSLQAGFDGVEIH 180 ALPVAPSAVQPEGQAFTESGFKPFVTPRALEAAELPAIV QYKKAAQLS+QAGFDGVEIH Sbjct: 121 ALPVAPSAVQPEGQAFTESGFKPFVTPRALEAAELPAIVEQYKKAAQLSMQAGFDGVEIH 180 Query: 181 AANGYLLDQFLRDKTNQRTDAYGGSIENRARLLLEVVQAVTSVVPSERVGIRLSPISPAN 240 AANGYLLDQFLRDKTNQRTD YGGSIENRARLLLEVVQAVTSVVPSERVGIRLSPISPAN Sbjct: 181 AANGYLLDQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVPSERVGIRLSPISPAN 240 Query: 241 DIADSDPKALFSYVVEQLNRFKLVYLHVVEGATGGPREVPGGFDLQVLRDLFKGLYIANN 300 DIADSDPKALFSYVVEQLNRFKLVYLHVVEGATGGPREVPGGFDLQVLRDLFKGLYIANN Sbjct: 241 DIADSDPKALFSYVVEQLNRFKLVYLHVVEGATGGPREVPGGFDLQVLRDLFKGLYIANN 300 Query: 301 GYDLDMALQARASNRADLVAFGRPWIANPDLVQRFLHGAELATFNQATLYGGGAAGYTDY 360 GYDLDMALQARASNRADLVAFGRPWIANPDLVQRFLHGAELATFNQATLYGGGAAGYTDY Sbjct: 301 GYDLDMALQARASNRADLVAFGRPWIANPDLVQRFLHGAELATFNQATLYGGGAAGYTDY 360 Query: 361 PPMKQG 366 PPMKQG Sbjct: 361 PPMKQG 366 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 102/275 (37%), Positives = 152/275 (55%), Gaps = 14/275 (5%) Query: 7 NSDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRA--GAGLIIAEATQ 64 +S LF P+ L V L NRI ++P+ + A+ G V +D + RA GAGL++ EAT Sbjct: 2 SSHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFV-NDWHLVHLGSRAVGGAGLVLMEATA 60 Query: 65 ISPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGRISHPDLQP--GHAL 122 + EG+ + GI+ D H+A ++IT + +G +QL H GR S L+P G A Sbjct: 61 VVAEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSS-ILRPWDGPAG 119 Query: 123 PVAPSAVQPEGQAFTESGFKP-FVTPRALEAAELPAIVAQYKKAAQLSLQAGFDGVEIHA 181 V PSA QA + F + TP+A+ ++ A+V + AAQ +L AGF +E+H Sbjct: 120 SVPPSAGGWTPQAPSALPFDDGYSTPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHG 179 Query: 182 ANGYLLDQFLRDKTNQRTDAYGGSIENRARLLLEVVQAVTSVVPSER-VGIRLSPISPAN 240 A+GYL QFL +NQR+D YGGS ENR R LLE+ +A +V P E + +RLS A Sbjct: 180 AHGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLS----AT 235 Query: 241 DIADSDPKALFSYVVEQLNRFKLVYLHVVEGATGG 275 D D + + Q R + + + +V+ ++GG Sbjct: 236 DWVDGGWTPEETVTLSQ--RLRELGVDLVDVSSGG 268 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 122/233 (52%), Gaps = 26/233 (11%) Query: 8 SDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQ--RAGAGLIIAEATQI 65 S LF+P +L V L+NRI + P+ + A G V +D +YA R GAGL+I EAT + Sbjct: 2 SALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKV-NDWHLSHYASIARGGAGLVIVEATAV 60 Query: 66 SPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGR-------------IS 112 SPEG+ GI++DA A+ + A+ A G +Q+ H GR I+ Sbjct: 61 SPEGRITPGCTGIWSDALGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA 120 Query: 113 HPDLQPGHALPVAPSAVQPEGQAFTESGFKPFVTPRALEAAELPAIVAQYKKAAQLSLQA 172 D + L +PSA+ G+ + P+A+ ++ + + AA + +A Sbjct: 121 ADDARGWDTL--SPSAIA-YGRGLPK-------VPKAMSLDDIARVRQDFVNAAVRAREA 170 Query: 173 GFDGVEIHAANGYLLDQFLRDKTNQRTDAYGGSIENRARLLLEVVQAVTSVVP 225 GF+ +E+H A+GYL F NQR D YGGS+ENRAR LLE ++AV V P Sbjct: 171 GFEWLELHFAHGYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWP 223 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,203,229 Number of extensions: 53677 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 3 Length of query: 366 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 280 Effective length of database: 1,212,660 Effective search space: 339544800 Effective search space used: 339544800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)