BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0055.p
         (329 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312410|ref|YP_003776502.1| dienelactone hydrolase [Herbasp...   607   e-175

>gi|300312410|ref|YP_003776502.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  607 bits (1564), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 302/304 (99%), Positives = 302/304 (99%)

Query: 26  PPQPAGLRWLFFALAWLTLPLAAQTLPPAQTVHFPSADGRTELTAYLFTPAGAGPHPAVV 85
           PPQ AGLRWLFFALAWLTLPLAAQTLPPAQTVHFPSADGRTELTAYLFTPAGAGPHPAVV
Sbjct: 42  PPQAAGLRWLFFALAWLTLPLAAQTLPPAQTVHFPSADGRTELTAYLFTPAGAGPHPAVV 101

Query: 86  MLHGRAGPYSSRINGDCTRIGPALPSPCDASTLSQRHQAWAAYWIERGYLALLVDSYGPR 145
           MLHGRAGPYSSRINGDCTRIGPALPSPCDASTLSQRHQAWAAYWIERGYLALLVDSYGPR
Sbjct: 102 MLHGRAGPYSSRINGDCTRIGPALPSPCDASTLSQRHQAWAAYWIERGYLALLVDSYGPR 161

Query: 146 GVAHGFGRHTHGAPERAEVNELTVRPLDAEGALAWLAPRSDVNPARILLQGWSNGASTAL 205
           GVAHGFGRHTHGAPERAEVNELTVRPLDAEGALAWLAPRSDVNPARILLQGWSNGASTAL
Sbjct: 162 GVAHGFGRHTHGAPERAEVNELTVRPLDAEGALAWLAPRSDVNPARILLQGWSNGASTAL 221

Query: 206 NVMQRQASRLGGTAPSFAGAMVFYPGCGPQALLSSSPELDRPVQVLLGAADQEVSPQRCL 265
           NVMQRQASRLGGTAPSFAGAMVFYPGCGPQALLSSSPELDRPVQVLLGAADQEVSPQRCL
Sbjct: 222 NVMQRQASRLGGTAPSFAGAMVFYPGCGPQALLSSSPELDRPVQVLLGAADQEVSPQRCL 281

Query: 266 RVLRQAIPMRRNSSPVVTLYPGATHDFDDPGRPRQAIPANRQARADALARLGPWADQVPP 325
           RVLRQAIPMRRNSSPVVTLYPGATHDFDDPGRPRQAIPANRQARADAL RLGPWADQVPP
Sbjct: 282 RVLRQAIPMRRNSSPVVTLYPGATHDFDDPGRPRQAIPANRQARADALTRLGPWADQVPP 341

Query: 326 ATLP 329
           ATLP
Sbjct: 342 ATLP 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,118,835
Number of extensions: 50344
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,212,660
Effective search space: 294676380
Effective search space used: 294676380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)