BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0041.p
         (638 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312396|ref|YP_003776488.1| chemotaxis CheA protein [Herbas...   290   3e-79
gi|300311033|ref|YP_003775125.1| chemotaxis histidine kinase [He...    67   6e-12

>gi|300312396|ref|YP_003776488.1| chemotaxis CheA protein
           [Herbaspirillum seropedicae SmR1]
          Length = 638

 Score =  290 bits (741), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60
           MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV
Sbjct: 1   MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60

Query: 61  SACHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKD 120
           SACHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKD
Sbjct: 61  SACHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKD 120

Query: 121 ILTQAIEGKSE 131
           ILTQAIEGKSE
Sbjct: 121 ILTQAIEGKSE 131


>gi|300311033|ref|YP_003775125.1| chemotaxis histidine kinase
          [Herbaspirillum seropedicae SmR1]
          Length = 837

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 5  MLKD-FVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSAC 63
          +L+D F++E  +L   + E L+ LE  P+ +E+L ++FR  HT+KG +G  ++P M    
Sbjct: 3  LLRDQFILETRDLLQGISEKLMQLEDAPEHVELLESLFRMVHTLKGNSGLFDVPEMTRVL 62

Query: 64 HLTENLFDALRTGKAPVTPLAIEAALQASGFVA 96
          H  E+L DA+R  +   + +  +  L A  FVA
Sbjct: 63 HACEDLMDAVRRRQVAYSEVLADRLLDAMDFVA 95


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.132    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,235,250
Number of extensions: 34516
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 4
Length of query: 638
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 547
Effective length of database: 1,188,985
Effective search space: 650374795
Effective search space used: 650374795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 134 (56.2 bits)