BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0040.p
         (246 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312395|ref|YP_003776487.1| chemotaxis phosphatase [Herbasp...   494   e-141
gi|300311340|ref|YP_003775432.1| chemotaxis phosphatase CheZ [He...   153   1e-38

>gi|300312395|ref|YP_003776487.1| chemotaxis phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 246

 Score =  494 bits (1272), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MSDDVDLEALFDEISAQTLPAMTATGEEAVAQAADGAAEAAAPEDQSDKPMYARLGGIVR 60
           MSDDVDLEALFDEISAQTLPAMTATGEEAVAQAADGAAEAAAPEDQSDKPMYARLGGIVR
Sbjct: 1   MSDDVDLEALFDEISAQTLPAMTATGEEAVAQAADGAAEAAAPEDQSDKPMYARLGGIVR 60

Query: 61  LLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSGMPAQDRLQEQ 120
           LLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSGMPAQDRLQEQ
Sbjct: 61  LLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSGMPAQDRLQEQ 120

Query: 121 AKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIMMAQDFQDITG 180
           AKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIMMAQDFQDITG
Sbjct: 121 AKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIMMAQDFQDITG 180

Query: 181 QLIKKIVGITTTAERELAQLLRDNAPPEVRAQIEAEKPVSLMNGPASPGTAMGQTDVDDL 240
           QLIKKIVGITTTAERELAQLLRDNAPPEVRAQIEAEKPVSLMNGPASPGTAMGQTDVDDL
Sbjct: 181 QLIKKIVGITTTAERELAQLLRDNAPPEVRAQIEAEKPVSLMNGPASPGTAMGQTDVDDL 240

Query: 241 LDSLGF 246
           LDSLGF
Sbjct: 241 LDSLGF 246


>gi|300311340|ref|YP_003775432.1| chemotaxis phosphatase CheZ
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  153 bits (386), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 118/200 (59%), Gaps = 9/200 (4%)

Query: 51  MYARLGGIVRLLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSG 110
           +  R+G + R LHDS+R LG+DR L   AS + DA+ RLE++A +TEQAA +VLNA +  
Sbjct: 22  VLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARMTEQAAQRVLNATELA 81

Query: 111 MPAQDRLQEQAKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIM 170
            P QDR+ E A D+  +W    AG  S    ++LA  +  F A   E +   K ++L+IM
Sbjct: 82  SPLQDRISEGATDLKAQWDAATAGSFSEAHCRELAARTSSFLAQASEDSSVTKQQLLDIM 141

Query: 171 MAQDFQDITGQLIKKIVGITTTAERELAQLLRDNAPPEVRAQIEAEKPVSLMNGPASPGT 230
           MAQDFQD+TGQ+IK++  +    E +L QLL D AP E +      +   L+NGP    T
Sbjct: 142 MAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDYAPSEAK-----REDTGLLNGPQIDPT 196

Query: 231 AM----GQTDVDDLLDSLGF 246
                  Q  VDDLL+SLGF
Sbjct: 197 GKDVIANQGQVDDLLESLGF 216


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.127    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 660,346
Number of extensions: 23770
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,226,865
Effective search space: 199978995
Effective search space used: 199978995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)