BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0031.p (357 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 640 0.0 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 313 1e-86 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 283 1e-77 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 272 3e-74 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 270 1e-73 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/356 (89%), Positives = 332/356 (93%), Gaps = 8/356 (2%) Query: 1 MAAISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSI 60 MAAISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSI Sbjct: 1 MAAISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSI 60 Query: 61 HIGGRDVTQLPPAQRKISMVFQSFALFPHLSVRDNILFGVRVRKEPRAGYETRLQRVADI 120 HIGGRDVTQLPPAQRKISMVFQS+ALFPHLSVRDNILFGVRVRKEPRAGYETRL+RVADI Sbjct: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADI 120 Query: 121 LGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ Sbjct: 121 LGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 Query: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN Sbjct: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 Query: 241 LLPLQAHTHGLAIAGSNVVLRELDQTPQQLGLRPEHIRLADASEATAPALVETVEYFGAD 300 LLPL+ H GL I+GS+V+LR+L QTP QLGLRPEHIRLADAS+++ PA+VETVEYFGAD Sbjct: 241 LLPLEPHAEGLVISGSDVILRDLGQTPWQLGLRPEHIRLADASDSSVPAVVETVEYFGAD 300 Query: 301 AIIGARIGSASLPVRRRRSDPPGXPGQHRFDAGEAIHLAWDARDQYFFDQQSGLRR 356 IIGARIG+ASL VR PGQHR AG+ + LAWDARDQYFFD SGLRR Sbjct: 301 TIIGARIGAASLLVR--------APGQHRLGAGDPVRLAWDARDQYFFDPASGLRR 348 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 313 bits (803), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 165/364 (45%), Positives = 232/364 (63%), Gaps = 20/364 (5%) Query: 1 MAAISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSI 60 MA++ ++ V K +G Q +R +D ++ G+FTVL+GPSGCGKST LR++AGL++ + G I Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 HIGGRDVTQLPPAQRKISMVFQSFALFPHLSVRDNILFGVRVRKEPRAGYETRLQRVADI 120 IGG V + P R I+MVFQ++AL+PH++VRDN+ F + + K+ +A + R+++ ADI Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 LGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL LL+R P QLSGGQ+QRVA+GRAI+ D V L DEPLSNLDA+LR +MR EI+ L Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 Query: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 Q+L T +YVTHDQ EAM+MADQ++++R+G +EQ P DLY PA F A FIG+P MN Sbjct: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMN 240 Query: 241 LLP--LQAHTHGLAIA---GSNV------VLRELDQTPQQLGLRPEHIRLADASEATAPA 289 +P L+ + G + G+ V L+ D G+RPEH+ + A + A Sbjct: 241 FIPATLRRNATGAEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSIGAAGQGIATK 300 Query: 290 LVETVEYFGADAIIGARIGSASLPVRRRRSDPPGXPGQHRFDAGEAIHLAWDARDQYFFD 349 ++ VE GAD + +R G SL R +H F AG+ IHL D + FD Sbjct: 301 VI-VVEPTGADTEVFSRFGDTSLTSIFRE--------RHDFGAGDVIHLVPDHSRTHLFD 351 Query: 350 QQSG 353 +SG Sbjct: 352 AESG 355 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 283 bits (725), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 161/370 (43%), Positives = 226/370 (61%), Gaps = 23/370 (6%) Query: 1 MAAISLQGVCKHWGEA----QAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPS 56 MAAI L+ V K +G + ID E+ G+F V++GPSGCGKST LR++AGL++ S Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 57 SGSIHIGGRDVTQLPPAQRKISMVFQSFALFPHLSVRDNILFGVRVRKEPRAGYETRLQR 116 SG I IG R V L P +R I+MVFQ++AL+PH++V N+ +G++++ ++ + R+QR Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 117 VADILGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREI 176 A IL L LLER P QLSGGQ+QRVA+GRAI+ V L DEPLSNLDA+LR +MR EI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 177 RALQQQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGT 236 + L L T +YVTHDQ EAM++ ++I++ G EQ PA++YA+PAT F A FIG+ Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 237 PPMNLLPLQAHTHGLAIAGSNVVLRELDQTPQQ----------LGLRPEHIR-LADASEA 285 PPMNLL + G + S ++ + PQ LG+RPEH+ + D S A Sbjct: 241 PPMNLLQGKLSADGASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPILDGSAA 300 Query: 286 TAPALVETVEYFGADAIIGARIGSASLPVRRRRSDPPGXPGQHRFDAGEAIHLAWDARDQ 345 VE VE GA+ ++ AR G +L +R P + G+ I ++ A D Sbjct: 301 QLSLEVELVEALGAELLVHARCGGQALVLR--------CPANVQVRTGQRIGASFGAGDV 352 Query: 346 YFFDQQSGLR 355 ++FD +S R Sbjct: 353 HWFDVKSTRR 362 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 272 bits (696), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 164/369 (44%), Positives = 219/369 (59%), Gaps = 25/369 (6%) Query: 1 MAAISLQGVCKHW-GEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGS 59 MA I Q + KH+ G + +D + G+F VLLGPSGCGKST LR+IAGL+ S G+ Sbjct: 1 MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT 60 Query: 60 IHIGGRDVTQLPPAQRKISMVFQSFALFPHLSVRDNILFGVRVRKEPRAGYETRLQRVAD 119 + IGG V LP +R ++MVFQ++AL+PH+SV DNI FG+R K P A + R++ VA Sbjct: 61 LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 Query: 120 ILGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRAL 179 +L L LLER+P +SGGQQQR A+ RAII V L DEPLSNLDA+LR ++R +I+ L Sbjct: 121 LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 Query: 180 QQQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPM 239 Q+L T VYVTHDQ EAM++AD+VIL+++GRI Q +PA+LY P FAA FIGTP M Sbjct: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAM 240 Query: 240 NLLP-----------LQAHTHGLAIAGSNVVLRELDQTPQQLGLRPEHIRLAD----ASE 284 N L ++ A+ G R +L +RP+H+R+A A+ Sbjct: 241 NFLSGTVQRQDGQLFIETAHQRWALTGERFS-RLRHAMAVKLAVRPDHVRIAGEREPAAS 299 Query: 285 ATAPALVETVEYFGADAIIGARIGSASLPVRRRRSDPPGXPGQHRFDAGEAIHLAWDARD 344 T P VE VE GADA++ R G +L P G + LA D + Sbjct: 300 LTCPVSVELVEILGADALLTTRCGDQTLTAL--------VPADRLPQPGATLTLALDQHE 351 Query: 345 QYFFDQQSG 353 + FD +SG Sbjct: 352 LHVFDVESG 360 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 270 bits (690), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 134/296 (45%), Positives = 196/296 (66%), Gaps = 11/296 (3%) Query: 1 MAAISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSI 60 MAA+S++ + K + + + +R+I+ E++ G+F V +GPSGCGKST LR+IAGL++ S G + Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 HIGGRDVTQLPPAQRKISMVFQSFALFPHLSVRDNILFGVRVRKEPRAGYETRLQRVADI 120 IG R + ++P ++R ++MVFQS+AL+PH+S+ DN+ FG+++ + +A + +Q A I Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 LGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 L + HLL+R+P LSGGQ+QRVA+GRAI V L DEPLSNLDA LR +MR E L Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 Query: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 L TM+YVTHDQ EAM++AD++++L EGRIEQ +P LY PA F A FIG+P MN Sbjct: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 Query: 241 LL-----PLQAHTHGLAIAGSNVVLRELDQTPQQ------LGLRPEHIRLADASEA 285 + +QA + + G + +D + Q LG+RPEH+ +A A Sbjct: 241 FIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNIAQGQAA 296 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,110,898 Number of extensions: 47098 Number of successful extensions: 597 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 356 Number of HSP's successfully gapped: 146 Length of query: 357 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 271 Effective length of database: 1,212,660 Effective search space: 328630860 Effective search space used: 328630860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)