BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0030.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312385|ref|YP_003776477.1| SorC family transcription regul...   642   0.0  
gi|300309780|ref|YP_003773872.1| transcription regulator [Herbas...    96   4e-21

>gi|300312385|ref|YP_003776477.1| SorC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/315 (100%), Positives = 315/315 (100%)

Query: 1   MAVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHDPQQVSGSLEAA 60
           MAVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHDPQQVSGSLEAA
Sbjct: 12  MAVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHDPQQVSGSLEAA 71

Query: 61  IANHYRLHSIQVVPVAAAATDKETLQRVTCHAAAYVNSLVTPGTIIGLAWGTTVAQIADQ 120
           IANHYRLHSIQVVPVAAAATDKETLQRVTCHAAAYVNSLVTPGTIIGLAWGTTVAQIADQ
Sbjct: 72  IANHYRLHSIQVVPVAAAATDKETLQRVTCHAAAYVNSLVTPGTIIGLAWGTTVAQIADQ 131

Query: 121 LLPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVPAFFDYPETRTA 180
           LLPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVPAFFDYPETRTA
Sbjct: 132 LLPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVPAFFDYPETRTA 191

Query: 181 LWREKSIKAIRDLQERASILLFSIGAEATGSYIHTAGYLGEEERQILRDEGLVGDIATVF 240
           LWREKSIKAIRDLQERASILLFSIGAEATGSYIHTAGYLGEEERQILRDEGLVGDIATVF
Sbjct: 192 LWREKSIKAIRDLQERASILLFSIGAEATGSYIHTAGYLGEEERQILRDEGLVGDIATVF 251

Query: 241 FRADGSWRDVAFNARNSGPDMDCFTRAAHALCVVSGAGKLPGLKAALRGGFINELIIDEP 300
           FRADGSWRDVAFNARNSGPDMDCFTRAAHALCVVSGAGKLPGLKAALRGGFINELIIDEP
Sbjct: 252 FRADGSWRDVAFNARNSGPDMDCFTRAAHALCVVSGAGKLPGLKAALRGGFINELIIDEP 311

Query: 301 SARLLVEQIRNGAAA 315
           SARLLVEQIRNGAAA
Sbjct: 312 SARLLVEQIRNGAAA 326


>gi|300309780|ref|YP_003773872.1| transcription regulator
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 147/316 (46%), Gaps = 23/316 (7%)

Query: 1   MAVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHDPQQVSGSLEAA 60
           +A R A +YY    T   IA+ +G SR    R++++A +  LV++++  P  VS  LE A
Sbjct: 10  LAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHP--VSSCLELA 67

Query: 61  --IANHYRLHSIQVVPVAAAA---TDKETLQRVTCHAAA-----YVNSLVTPGTIIGLAW 110
             +   Y L   +VVP A  A    + + +Q++   A A     Y+ S      ++ +  
Sbjct: 68  QGLQERYGLDVCRVVPGAGGAGNPNESQEVQQMLAVAGAELMEQYLGSEAP--LVVNVGS 125

Query: 111 GTTVAQIADQL--LPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPV 168
           G T+    ++L  L R  H +  V++ G+ +     N +   +  + A+  GAR + LP 
Sbjct: 126 GRTLKAAIERLSELERPQHQI--VSMIGAFASDGSANRYD--VALQAAEKLGARFYLLPA 181

Query: 169 PAFFDYPETRTALWREKSIKAIRDLQERASILLFSIGAEATGSYIHTAGYLGEEERQILR 228
           P   +    R      ++ K +  L ERA +    IG  A    +H  G++ + E   L+
Sbjct: 182 PRVAESESDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDGEVAELQ 241

Query: 229 DEGLVGDIATVFFRADGSWRDVAFNARNSGPDMDCF-TRAAHALCVVSGAGKLPGLKAAL 287
            +G VG++    F  DG     + +AR + P +     R   A C   G+ K   ++AAL
Sbjct: 242 RQGAVGEMICHAFDIDGVMLPSSLSARVTTPPLTQRPQRPVIAFC--GGSKKAEAVRAAL 299

Query: 288 RGGFINELIIDEPSAR 303
           RGG++  L+ DE  AR
Sbjct: 300 RGGWLTGLVTDEVCAR 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,002,823
Number of extensions: 43260
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)