BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0018.p (547 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor trans... 965 0.0 gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans... 395 e-111 gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans... 368 e-103 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 232 6e-62 gi|300310662|ref|YP_003774754.1| aerotaxis sensor receptor trans... 228 9e-61 >gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/493 (99%), Positives = 491/493 (99%) Query: 55 MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT 114 MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT Sbjct: 1 MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT 60 Query: 115 AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAVLYRRFREGRARG 174 AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAA LYRRFREGRARG Sbjct: 61 AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAALYRRFREGRARG 120 Query: 175 LRFCHGLVVRSGLLGWTRLEQVLPVRWRLRLALAGGGLTALAGGILAGAPLAPMAASVLP 234 LRFCHGLVVRSGLLGWTRLEQVLPVRWRLRLALA GGLTALAGGILAGAPLAPMAASVLP Sbjct: 121 LRFCHGLVVRSGLLGWTRLEQVLPVRWRLRLALAAGGLTALAGGILAGAPLAPMAASVLP 180 Query: 235 PLALACLWLERRLAAPLELVLRQAKAVACGQPAQTQGLDRIDEIGLLLRAVNQSGLNLRA 294 PLALACLWLERRLAAPLELVL+QAKAVACGQPAQTQGLDRIDEIGLLLRAVNQSGLNLRA Sbjct: 181 PLALACLWLERRLAAPLELVLQQAKAVACGQPAQTQGLDRIDEIGLLLRAVNQSGLNLRA 240 Query: 295 LIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMATAVRHSADSAQA 354 LIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMATAVRHSADSAQA Sbjct: 241 LIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMATAVRHSADSAQA 300 Query: 355 AHAQARQTSRAAAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAFQTNILALNAAVE 414 AHAQARQTS+AAAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAFQTNILALNAAVE Sbjct: 301 AHAQARQTSQAAAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAFQTNILALNAAVE 360 Query: 415 AARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQRAEQAAAAIESI 474 AARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQRAEQAAAAIESI Sbjct: 361 AARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQRAEQAAAAIESI 420 Query: 475 VAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEHSAAAVAAMQQRM 534 VAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEHSAAAVAAMQQRM Sbjct: 421 VAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEHSAAAVAAMQQRM 480 Query: 535 QTLQQAVAVFEHD 547 QTLQQAVAVFEHD Sbjct: 481 QTLQQAVAVFEHD 493 >gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 395 bits (1015), Expect = e-111, Method: Compositional matrix adjust. Identities = 223/504 (44%), Positives = 315/504 (62%), Gaps = 15/504 (2%) Query: 54 LMSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAW 113 ++S TD +TY N F+E+SGF +L+G P N++RHPDMP EAFADMWAT++ G W Sbjct: 20 IVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPDMPAEAFADMWATIKGGTPW 79 Query: 114 TAVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAVLYRRFREGRAR 173 T +VKNR +G HYWVRANVTPIR G I G++SVRT+P + A LY R G+A+ Sbjct: 80 TGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPERDAVAGAEKLYASIRRGQAK 139 Query: 174 GLRFCHGLVVRSGLLGW----------TRLEQVLPVRWRLRLALAGGGLTALAGGILAGA 223 G+ G VVR+GL GW +RL + + ++LA+ G+ AL ++ Sbjct: 140 GIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLAIQLAVVVAGMAALHQWWISAL 199 Query: 224 PLAPMAASVLPPLALACLWLERRLAAPLELVLRQAKAVACGQPAQTQGLDRIDEIGLLLR 283 A S++ +AL L PL L A+ G + R DE+G LLR Sbjct: 200 AAAAALLSIVQWIAL-----RNALIKPLHQALDITHAITGGDLSVRIETTRHDELGRLLR 254 Query: 284 AVNQSGLNLRALIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMAT 343 ++ Q +NL A+I DV + V+ + A+R+IAS N DL +RT A L++TAS+ ++A+ Sbjct: 255 SLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANLEETASSMHELAS 314 Query: 344 AVRHSADSAQAAHAQARQTSRAAAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAFQ 403 VR +AD A A+ A S A +G D V TM++I+++S +I +I LIDSIAFQ Sbjct: 315 TVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHKIVDIISLIDSIAFQ 374 Query: 404 TNILALNAAVEAARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQR 463 TNILALNAAVEAARAGE GRGFAVVA+EVR+LAQRSA+AA+EIK LI SV + G ++ Sbjct: 375 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDASVEKVDIGNRQ 434 Query: 464 AEQAAAAIESIVAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEHS 523 EQA + + IVA Q +S ++G I + +QS G++QV ++ +D TQQNA++VE + Sbjct: 435 VEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEA 494 Query: 524 AAAVAAMQQRMQTLQQAVAVFEHD 547 AAA ++Q++ L QA++VF+ + Sbjct: 495 AAAAGSLQEQTVRLLQAISVFKFN 518 >gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 368 bits (944), Expect = e-103, Method: Compositional matrix adjust. Identities = 224/503 (44%), Positives = 315/503 (62%), Gaps = 10/503 (1%) Query: 53 TLMSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDA 112 +++S TD + Y N F+E+SGF E+LIG P NIVRHP+MPREAFADMWATL+ G Sbjct: 19 SIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPEMPREAFADMWATLKEGLP 78 Query: 113 WTAVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAVLYRRFREGRA 172 W +VKNR +G +YWV+ANVTP+R G G++SVRT+P+ +++AA YR+F G+A Sbjct: 79 WNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSREQVQAAEAAYRKFSAGQA 138 Query: 173 RGLRFCHGLVVRSGLLGWTRLEQVLPVRWRLRLALAGGGLTALAGGILAG--------AP 224 RGLR G VVR+GL GW + + LPV RL + L + GG +AG +P Sbjct: 139 RGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMFILGGAVAGNAVMSAGGSP 198 Query: 225 LAPMAASVLPPLALACLW--LERRLAAPLELVLRQAKAVACGQPAQTQGLDRIDEIGLLL 282 A + L L W L + APL+ ++ +A G ++GLLL Sbjct: 199 FAVWLGTAAGALMLLASWAMLHASIVAPLQRAIKAVHGLAGGDLDSHIDTTARGDMGLLL 258 Query: 283 RAVNQSGLNLRALIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMA 342 +A+ Q +NLRA+I DV V+ + ++ +IA+ N DL RT + L++TAS+ E+ A Sbjct: 259 QALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRTEAQASALEETASSVEEFA 318 Query: 343 TAVRHSADSAQAAHAQARQTSRAAAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAF 402 VR +ADSA A QA+ S A +G V ++ +TM +I AS +I +I GLID I+F Sbjct: 319 ATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEEIDAASHKIVDIIGLIDGISF 378 Query: 403 QTNILALNAAVEAARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQ 462 QTNILALNAAVEAARAGE GRGFAVVAAEVRTLAQRSA+AA++IK LI S + ++G Q Sbjct: 379 QTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAKDIKGLIDDSRAKVESGNQ 438 Query: 463 RAEQAAAAIESIVAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEH 522 + A A+ + ++M+ + I+ ++ EQS G+ Q++Q+ +D TQQNAA+VE Sbjct: 439 LVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQ 498 Query: 523 SAAAVAAMQQRMQTLQQAVAVFE 545 +AAA ++ + L QAV+VF+ Sbjct: 499 AAAAAENLRDQAVKLSQAVSVFK 521 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 232 bits (591), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 153/347 (44%), Positives = 213/347 (61%), Gaps = 5/347 (1%) Query: 201 WRLRLALAGGGLTALAGGILAGAPLAPMAASVLPPLALACLWLERRLAAPLELVLRQAKA 260 W L +AL A +L + + + +VL L L L RL L +V + Sbjct: 273 WLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALI--SRLLGRLTVVQGALEE 330 Query: 261 VACGQPAQTQGLD---RIDEIGLLLRAVNQSGLNLRALIDDVAAQVQGLEQASRQIASDN 317 +A G T+ LD R DE+G + A N+ + ++ D+ + ASR IAS N Sbjct: 331 IADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAASRDIASGN 390 Query: 318 ADLRQRTADTHAQLQQTASAAEQMATAVRHSADSAQAAHAQARQTSRAAAQGRDIVTQVV 377 DL QRT + L+QTA+A EQ+ ++VRH+AD+A A+ ++ S+ A QG +V QVV Sbjct: 391 MDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQGGTMVEQVV 450 Query: 378 QTMHQIADASGRIGEINGLIDSIAFQTNILALNAAVEAARAGEAGRGFAVVAAEVRTLAQ 437 QTM+ I +S +I +I +ID IAFQTNILALNAAVEAARAGE GRGFAVVA+EVR+LAQ Sbjct: 451 QTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQ 510 Query: 438 RSASAAREIKALIAHSVGQSQAGAQRAEQAAAAIESIVAQAQDMSTLIGAISTSAVEQSQ 497 RSA+AA+EIK LI SVGQ QAG QA A I S+V Q +S ++ I+ ++ EQSQ Sbjct: 511 RSATAAKEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVAEITAASREQSQ 570 Query: 498 GVSQVSQSALMLDGMTQQNAAMVEHSAAAVAAMQQRMQTLQQAVAVF 544 G++Q + + +D TQQNAA+VE +AA ++Q++ + L VA+F Sbjct: 571 GINQANDAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLAGIVALF 617 >gi|300310662|ref|YP_003774754.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 228 bits (581), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 194/539 (35%), Positives = 297/539 (55%), Gaps = 31/539 (5%) Query: 26 PTPAQPQPQPLFASSED-EGGYPYPEQATLMSSTDTSSVLTYANSSFVEVSGFHREQLIG 84 P P+ L +ED + E L++ TD + Y N++FV SG+ ++L+G Sbjct: 5 PATQDPRLPVLGHGNEDVQADMALGEDEYLITRTDIEGRMVYVNAAFVRRSGYAADELLG 64 Query: 85 QPHNIVRHPDMPREAFADMWATLRRGDAWTAVVKNRRADGRHYWVRANVTPIRRGGGITG 144 QP +++ PD P E AD+W T++ AWT V+++R DGR +W RA +T G G Sbjct: 65 QPASMMYAPDTPPELGADLWRTVKARGAWTGVMRHRGKDGRCFWARATITRTMVDGAHVG 124 Query: 145 FLSVRTQPAPHEIRAAAVLYRRFREGRARGLRFCHGLVVRSGLLGWTRLEQVL---PVRW 201 +VRT+ A HE+R R G R G R GL G RL ++ + W Sbjct: 125 HTTVRTRAADHEVRRMRAFTAARRRGAGRWWELREG---RLGLRGIGRLLRISLSPTLAW 181 Query: 202 RLRLA--------------LAGGGLTALAGGILAGAPLAPMAASVLPPLALACLWLERRL 247 R+R A L G G A G++ + +A + LALA RR+ Sbjct: 182 RMRFAQGLNAALLLVALLWLTGSGGAAGWQGVV----IVLLALWQVLVLALAA----RRV 233 Query: 248 AAPLELVLRQAKAVACGQPAQT--QGLDRIDEIGLLLRAVNQSGLNLRALIDDVAAQVQG 305 + P+E +LR A+++ G Q Q R DE+ L +++ +L +L+ D+ V Sbjct: 234 SRPVEGMLRHARSIGAGDLTQVVAQQGGRDDEVARLAMSMDVMQKSLASLVRDLREGVAT 293 Query: 306 LEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMATAVRHSADSAQAAHAQARQTSRA 365 + A+ +I+ N DL RT +T A ++Q+A ++ +AV+ +A SA AH A + +A Sbjct: 294 VGGAAAEISDANMDLAARTEETAAAVEQSAHRMAELDSAVQRNAVSAGQAHGLATASVQA 353 Query: 366 AAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAFQTNILALNAAVEAARAGEAGRGF 425 A G ++V QV+ +M +I+ ++ I EI+ +I+ IAFQTNILALNAAVEAARAG GRGF Sbjct: 354 AEAGSELVRQVIGSMDEISRSASGIAEISSVIEGIAFQTNILALNAAVEAARAGAHGRGF 413 Query: 426 AVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQRAEQAAAAIESIVAQAQDMSTLI 485 AVVA+EVR+LAQRS+ A R+I L+A S G A QA ++E IV A+ + + Sbjct: 414 AVVASEVRSLAQRSSDAVRQISQLLARSGSDVANGVNLAGQAGESLEQIVGLARKVGVTV 473 Query: 486 GAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEHSAAAVAAMQQRMQTLQQAVAVF 544 G IS ++ +Q ++ ++Q +D +QNAAMVE +AAA AA+ ++ + L+Q+VA+F Sbjct: 474 GEISEASRQQGGEITHINQVIGQIDDAVRQNAAMVEQAAAAAAALAEQSRRLEQSVAMF 532 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.128 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,157,071 Number of extensions: 38103 Number of successful extensions: 359 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 292 Number of HSP's successfully gapped: 71 Length of query: 547 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 457 Effective length of database: 1,193,720 Effective search space: 545530040 Effective search space used: 545530040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)