BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0012.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312369|ref|YP_003776461.1| nucleoside-diphosphate-sugar ep...   655   0.0  
gi|300310345|ref|YP_003774437.1| UDP-glucose 4-epimerase [Herbas...   147   1e-36

>gi|300312369|ref|YP_003776461.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/324 (99%), Positives = 324/324 (100%)

Query: 1   MHIVITGGAGFLGSRLARQLLQRGTLTGRDGQPQAIKRITLLDVAPAQGFDDPRIEAVTG 60
           MHIVITGGAGFLGSRLARQLLQRGTLTGRDGQPQAIKRITLLDVAPAQGFDDPRIEAVTG
Sbjct: 1   MHIVITGGAGFLGSRLARQLLQRGTLTGRDGQPQAIKRITLLDVAPAQGFDDPRIEAVTG 60

Query: 61  DIADAAVIERVITAETQSIFHLAAIVSGHAEADFDLGMKINFDATRVILERARALGSKPR 120
           DIADAAVIERVITAETQSIFHLAAIVSGHAEADFDLGMKINFDATRVILERARALGSKPR
Sbjct: 61  DIADAAVIERVITAETQSIFHLAAIVSGHAEADFDLGMKINFDATRVILERARALGSKPR 120

Query: 121 VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGFINGRALRMPTI 180
           VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGFI+GRALRMPTI
Sbjct: 121 VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGFIDGRALRMPTI 180

Query: 181 SVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGAD 240
           SVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGAD
Sbjct: 181 SVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGAD 240

Query: 241 LGLARFLSIDGLCVTVKEMVEALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK 300
           LGLARFLSIDGLCVTVKEMVEALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK
Sbjct: 241 LGLARFLSIDGLCVTVKEMVEALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK 300

Query: 301 ALGFTADANFADIIRAHIEDEVKK 324
           ALGFTADANFADIIRAHIEDEVKK
Sbjct: 301 ALGFTADANFADIIRAHIEDEVKK 324


>gi|300310345|ref|YP_003774437.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 161/320 (50%), Gaps = 14/320 (4%)

Query: 1   MHIVITGGAGFLGSRLARQLLQRGTLTGRDGQPQAIKRITLLDVAPAQGFDDPRIEAVTG 60
           M I++TG  GF+G+ L   L QRG   GR     A+    L + AP    D  RIE   G
Sbjct: 1   MKILVTGAGGFIGATLVALLRQRGQAGGRRISSLAVLDRQLGETAP----DMVRIE---G 53

Query: 61  DIADAAVIERVITAETQSIFHLAAIVSGHAEADFDLGMKINFDATRVILE---RARALGS 117
           ++ DA V  +++       FHLAA+  G AEAD  L  ++N DAT  + E   R      
Sbjct: 54  NLQDAQVQAQIVAFGADLCFHLAALPGGAAEADPALSRRVNLDATLDLFELLARRDPATP 113

Query: 118 KPRVVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGFINGRALRM 177
            P VV+ S++AV+G +LP  V   T   P   YGA K+  E+L+ DY+R+G ++GR+LR+
Sbjct: 114 PPVVVYASTIAVYGLDLPDPVTPATPPRPALIYGAHKLACEILLADYTRRGLLDGRSLRL 173

Query: 178 PTISVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIANLIHGHEIN 237
           P I  RP A +   S+F S ++     G+   CPV P    W MS ++   NL+H   ++
Sbjct: 174 PGIVARPRAASGLVSAFMSELLHALAAGELFTCPVGPQATAWWMSAQRCAENLLHAASMD 233

Query: 238 GA---DLGLARFLSIDGLCVTVKEMVEALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAF 294
                +   AR   +  L +++ ++V  L  + G +   L+ +     ++ +   +P   
Sbjct: 234 PTRDPEGAAARVWPLPVLRLSIAQVVATLSALYGVDGQALVRYAPQPQVEAVFGRYP-RL 292

Query: 295 EAKRAKALGFTADANFADII 314
           + + A+ LG   D +  +++
Sbjct: 293 DDRAARQLGLRDDGSVQEMV 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,064,057
Number of extensions: 45180
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)