BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0003.p
         (541 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312361|ref|YP_003776453.1| cytochrome bd-type quinol oxida...  1090   0.0  

>gi|300312361|ref|YP_003776453.1| cytochrome bd-type quinol oxidase
           subunit 1 [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score = 1090 bits (2819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/541 (99%), Positives = 540/541 (99%)

Query: 1   MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60
           MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK
Sbjct: 1   MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60

Query: 61  LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG 120
           LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG
Sbjct: 61  LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG 120

Query: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180
           WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN
Sbjct: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180

Query: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240
           PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL
Sbjct: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240

Query: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT 300
           GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT
Sbjct: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT 300

Query: 301 RSADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLL 360
           RSADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLL
Sbjct: 301 RSADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLL 360

Query: 361 KKYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA 420
           KKYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA
Sbjct: 361 KKYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA 420

Query: 421 PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG 480
           PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG
Sbjct: 421 PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG 480

Query: 481 FILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKESAPGDVLPPPLNPSANAGSH 540
           FILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKES PGDVLPPPLNPSANAG+H
Sbjct: 481 FILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKESGPGDVLPPPLNPSANAGNH 540

Query: 541 P 541
           P
Sbjct: 541 P 541


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,688,377
Number of extensions: 70177
Number of successful extensions: 284
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 451
Effective length of database: 1,193,720
Effective search space: 538367720
Effective search space used: 538367720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 133 (55.8 bits)