BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0132.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311899|ref|YP_003775991.1| hemolysin-type calcium binding ...   244   2e-66
gi|300312186|ref|YP_003776278.1| calcium binding secreted hemoly...    62   2e-11

>gi|300311899|ref|YP_003775991.1| hemolysin-type calcium binding
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1974

 Score =  244 bits (624), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/195 (70%), Positives = 138/195 (70%), Gaps = 55/195 (28%)

Query: 1   VSTTPTKQGQSTSTTESHDPIIRRINDRFVSIQTGSEFKVVFSPLHPGIKLFDGPPPTPA 60
           VSTTPTKQGQSTST ESHDPIIRRINDRFVSIQTGSEFKVVFSPLHPGIKLFDGPPPTPA
Sbjct: 6   VSTTPTKQGQSTSTAESHDPIIRRINDRFVSIQTGSEFKVVFSPLHPGIKLFDGPPPTPA 65

Query: 61  GKPASVAPVNS----------------------DKPATVAPVNSDKPASV---------- 88
           GKPASVAPVNS                      DKPATVAPVNSDKPASV          
Sbjct: 66  GKPASVAPVNSDKPASTSPVSTSKPASITPVTIDKPATVAPVNSDKPASVPPVSTSKPAS 125

Query: 89  -----------------------PPVSTSKPASVTPASAAPVSTDKPAGAPTPAVAAILP 125
                                  PPVSTSKPASVTPA AAPVSTDKPAGAPTPAVAAILP
Sbjct: 126 VTPVTIDKPATVAPVNSDKPASTPPVSTSKPASVTPAGAAPVSTDKPAGAPTPAVAAILP 185

Query: 126 AEHDKIDGKDVLVYG 140
           AEHDKIDGKDVLVYG
Sbjct: 186 AEHDKIDGKDVLVYG 200



 Score = 70.9 bits (172), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 1    VSTTP-TKQGQSTSTTESHDPIIRRINDRFVSIQTGSEFKVVFSPLHPGIKLFDGPPPTP 59
            + TTP T++ Q+ ++T + + +I RINDRFVSI+ GS  +VVFSP+ PGIKLF   PPTP
Sbjct: 1202 IVTTPNTQKAQTAASTAAPELVITRINDRFVSIKRGSISEVVFSPIRPGIKLFADAPPTP 1261

Query: 60   AGKPASVAPV 69
            A +P +  PV
Sbjct: 1262 ASQPVAANPV 1271


>gi|300312186|ref|YP_003776278.1| calcium binding secreted hemolysin
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1080

 Score = 62.0 bits (149), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 33/43 (76%)

Query: 20  PIIRRINDRFVSIQTGSEFKVVFSPLHPGIKLFDGPPPTPAGK 62
           PIIRRINDRF+SIQTGS  +V FSP+ PG+ LFD   P P+ K
Sbjct: 163 PIIRRINDRFISIQTGSVSEVRFSPIRPGLGLFDAGFPAPSVK 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.127    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 490,335
Number of extensions: 20553
Number of successful extensions: 318
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 3
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 126 (53.1 bits)