BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0128.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311902|ref|YP_003775994.1| phytoene synthase [Herbaspirill...   537   e-154
gi|300311904|ref|YP_003775996.1| phytoene synthase [Herbaspirill...    99   3e-22

>gi|300311902|ref|YP_003775994.1| phytoene synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 269

 Score =  537 bits (1383), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/269 (98%), Positives = 266/269 (98%)

Query: 1   MAVDHYENFPVASLLLPARLRPAVADIYAFARSADDIADEGDAAPEERLAGLHAYEAQLD 60
           MAVDHYENFPVASLLLPARLRPAV DIYAFARSADDIADEGDAAPEERLAGLHAYEAQLD
Sbjct: 1   MAVDHYENFPVASLLLPARLRPAVTDIYAFARSADDIADEGDAAPEERLAGLHAYEAQLD 60

Query: 61  LIARQQPCATPMFERLRHTIARHELPLQPLRDLLSAFRQDVVTTRYEHYTDLLDYCRRSA 120
           LIARQQPCATPMFERLRHTIARHELPLQPLRDLLSAFRQDVVTTRYEHYTDLLDYCRRSA
Sbjct: 61  LIARQQPCATPMFERLRHTIARHELPLQPLRDLLSAFRQDVVTTRYEHYTDLLDYCRRSA 120

Query: 121 NPVGTLMLHLYGAASEENLRDSDAICSALQLINFWQDIAIDWQKQRIYLPLEDLARFGVT 180
           NPVGTLMLHLYGAASEENLRDSDAICSALQLINFWQDIAIDWQKQRIYLPLEDLARFGVT
Sbjct: 121 NPVGTLMLHLYGAASEENLRDSDAICSALQLINFWQDIAIDWQKQRIYLPLEDLARFGVT 180

Query: 181 PEDIAAGRCDGRWQQLMRFEVERARALMLAGAPLAKRLPGRIGWELRLVVQGGLRILTRI 240
           PEDIAAGRCDGRWQQLMRFEVERARALMLAGAPLAKRLPGRIGWELRLVVQGGLRIL RI
Sbjct: 181 PEDIAAGRCDGRWQQLMRFEVERARALMLAGAPLAKRLPGRIGWELRLVVQGGLRILARI 240

Query: 241 ERVQGDVFGHRPKLGKADWLAVGWRALTM 269
           ERVQGDVFGHRPKLGKADWLAVG RALTM
Sbjct: 241 ERVQGDVFGHRPKLGKADWLAVGGRALTM 269


>gi|300311904|ref|YP_003775996.1| phytoene synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 277

 Score = 99.4 bits (246), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 2/201 (0%)

Query: 7   ENFPVASLLLPARLRPAVADIYAFARSADDIADEGDAAPEERLAGLHAYEAQLDLIARQQ 66
            +F  + L LP + R A+  +YAF R  DD  DE +     R   L  +  ++  +   Q
Sbjct: 16  SSFYYSFLFLPPQRRLAITALYAFCREVDDTVDEIEDTMVAR-TKLMWWRKEIAAMLEGQ 74

Query: 67  PCATPMFERLRHTIARHELPLQPLRDLLSAFRQDVVTTRYEHYTDLLDYCRRSANPVGTL 126
           P   P+ + L   +A + L  + L+ ++     D+  +RY  Y  L  YC   A  VG L
Sbjct: 75  PT-HPVTKALHPHVATYGLKGEHLQAIIDGMEMDLDQSRYLDYPGLQRYCWHVAGVVGVL 133

Query: 127 MLHLYGAASEENLRDSDAICSALQLINFWQDIAIDWQKQRIYLPLEDLARFGVTPEDIAA 186
              ++G      L  ++ +  A QL N  +D+  D +K RIYLP+ +L +F VT  DI  
Sbjct: 134 SASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNELQQFNVTAADILN 193

Query: 187 GRCDGRWQQLMRFEVERARAL 207
            R   R++ LM+F+VERA+A+
Sbjct: 194 ARHSERFEALMKFQVERAQAV 214


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 865,385
Number of extensions: 36395
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)