BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0125.p
         (420 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311905|ref|YP_003775997.1| squalene/phytoene dehydrogenase...   809   0.0  

>gi|300311905|ref|YP_003775997.1| squalene/phytoene dehydrogenase;
           carotene 7,8-desaturase [Herbaspirillum seropedicae
           SmR1]
          Length = 443

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/415 (98%), Positives = 411/415 (99%)

Query: 6   RRVSLFEAARTLGGRARRVELEERVVDNGQHILLGAYRATLALMKQVGVDPASALLRLPL 65
            RVSLFEAARTLGGRARRVELEERVVDNGQHILLGAYRATLALMKQVGVD ASALLRLPL
Sbjct: 29  HRVSLFEAARTLGGRARRVELEERVVDNGQHILLGAYRATLALMKQVGVDSASALLRLPL 88

Query: 66  QMRYPLQGNPEGMDFVAPRLPAPWHVAVALLRAKGLTREDKMALARFSTTARWMGWQLHQ 125
           QMRYPLQGN EGMDFVAPRLPAPWHVAVALLRAKGLTREDKMALARFSTTARWMGWQLHQ
Sbjct: 89  QMRYPLQGNAEGMDFVAPRLPAPWHVAVALLRAKGLTREDKMALARFSTTARWMGWQLHQ 148

Query: 126 DCSVSELLARFDQTPRVIRLMWRPLCIAALNTPPERASAQVFLNVLRDSLGARRAASDML 185
           DCSVSELLARFDQTPRVIRLMWRPLCIAALNTPPERASAQVFLNVLRDSLGARRAASDML
Sbjct: 149 DCSVSELLARFDQTPRVIRLMWRPLCIAALNTPPERASAQVFLNVLRDSLGARRAASDML 208

Query: 186 IPRLDLSALLPDAAAAYLAKRGGLVQAGVAVAHLLPGQQDTTWRLQDRAGESLGEFAGVV 245
           IPRLDLSALLPDAAAAYLAKRGGLVQAGVAVAHLLPGQQDTTWRLQDRAGESLGEFAGVV
Sbjct: 209 IPRLDLSALLPDAAAAYLAKRGGLVQAGVAVAHLLPGQQDTTWRLQDRAGESLGEFAGVV 268

Query: 246 LATGPEAAAQLLQGLHDTSRLESLQHEPITTCYLHYPQGARLPAPFLALADDPQRQAWGQ 305
           LATGPEAAAQLLQGLHDTSRLESLQHEPITTCYLHYPQGARLPAPFLALADDPQRQAWGQ
Sbjct: 269 LATGPEAAAQLLQGLHDTSRLESLQHEPITTCYLHYPQGARLPAPFLALADDPQRQAWGQ 328

Query: 306 FVFDRGQLGGEAGLLAVVVSAAGQAIADGQAALTEGVTRQLASDFADPTLATPGWSRVIT 365
           FVFDRGQLGGEAGLLAVVVSAAGQAIADGQAALTEGVTRQLASDFADPTLATPGWSRVIT
Sbjct: 329 FVFDRGQLGGEAGLLAVVVSAAGQAIADGQAALTEGVTRQLASDFADPTLATPGWSRVIT 388

Query: 366 EKRATFACTPGLVRPDSTDLPAGLALAGDYVAGDYPATLEGAVRSAMAAARQLAG 420
           EKRATFACTPGLVRPDS DLPAGLALAGDYVAGDYPATLEGAVRSAMAAAR++AG
Sbjct: 389 EKRATFACTPGLVRPDSADLPAGLALAGDYVAGDYPATLEGAVRSAMAAARRVAG 443


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,246,041
Number of extensions: 50198
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,203,190
Effective search space: 399459080
Effective search space used: 399459080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)