BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0120.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311910|ref|YP_003776002.1| transmembrane sensor histidine ...   431   e-122
gi|300313027|ref|YP_003777119.1| two component transmembrane sen...    65   4e-12
gi|300310697|ref|YP_003774789.1| two component hybrid sensor his...    56   3e-09
gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729...    54   7e-09

>gi|300311910|ref|YP_003776002.1| transmembrane sensor histidine
           kinase transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 443

 Score =  431 bits (1109), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/218 (100%), Positives = 218/218 (100%)

Query: 1   LSTVAVIAGELRRDMATQPALAAYDEELRVVEEQIAVCKAALESMRQDADAQTRNEDSAP 60
           LSTVAVIAGELRRDMATQPALAAYDEELRVVEEQIAVCKAALESMRQDADAQTRNEDSAP
Sbjct: 226 LSTVAVIAGELRRDMATQPALAAYDEELRVVEEQIAVCKAALESMRQDADAQTRNEDSAP 285

Query: 61  ITPWLTTLLEGWRLRHPAVLLSAEVHQPGWVAARLEDLSQILLTLLDNAAHAVRERGSEG 120
           ITPWLTTLLEGWRLRHPAVLLSAEVHQPGWVAARLEDLSQILLTLLDNAAHAVRERGSEG
Sbjct: 286 ITPWLTTLLEGWRLRHPAVLLSAEVHQPGWVAARLEDLSQILLTLLDNAAHAVRERGSEG 345

Query: 121 RVSIRMRAADEPAGRPAQKAAIIEIADNGSGIAPELLQRLGRAPVASSSGGSGIGLMLAF 180
           RVSIRMRAADEPAGRPAQKAAIIEIADNGSGIAPELLQRLGRAPVASSSGGSGIGLMLAF
Sbjct: 346 RVSIRMRAADEPAGRPAQKAAIIEIADNGSGIAPELLQRLGRAPVASSSGGSGIGLMLAF 405

Query: 181 ASAAHLGGKLRLYSTPGQGTCAELRLPLSAMPSPGPAD 218
           ASAAHLGGKLRLYSTPGQGTCAELRLPLSAMPSPGPAD
Sbjct: 406 ASAAHLGGKLRLYSTPGQGTCAELRLPLSAMPSPGPAD 443


>gi|300313027|ref|YP_003777119.1| two component transmembrane sensor
           histidine kinase [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score = 65.1 bits (157), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 21/118 (17%)

Query: 97  DLSQILLTLLDNAAHAVRERGSEGRVSI-RMRAADEPAGRPAQKAAIIEIADNGSGIAPE 155
           +L+Q+ + LL NAA A+ ERG+   V+I   RA D+ +         + I+D G GIAPE
Sbjct: 333 ELNQVFMNLLVNAAQAISERGT---VTICTARAGDKVS---------VSISDTGHGIAPE 380

Query: 156 LLQRLGR-----APVASSSGGSGIGLMLAFASAAHLGGKLRLYSTPGQGTCAELRLPL 208
            L R+        PV S   G+G+GL L++      GG +R+ S PG GT   + LP+
Sbjct: 381 NLNRIFEPFFTTKPVGS---GTGLGLSLSYGIVKKHGGDIRVSSAPGCGTTFTIELPI 435


>gi|300310697|ref|YP_003774789.1| two component hybrid sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 916

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 13/116 (11%)

Query: 98  LSQILLTLLDNAAHAVRERGSEGRV--SIRMRAADEPAGRPAQKAAIIEIADNGSGIAPE 155
           L +IL  LLDNAA   RE    GR+   ++ +A    AG+ A +   IE++D G GIAP+
Sbjct: 564 LHRILGNLLDNAAKYTRE----GRIGLHVQWQADHADAGKGALQ---IEVSDTGCGIAPQ 616

Query: 156 LLQRLG----RAPVASSSGGSGIGLMLAFASAAHLGGKLRLYSTPGQGTCAELRLP 207
              R+     RA       G G+GL +       +GG + L S PG GT   L+LP
Sbjct: 617 FQSRIFEPFERADADRRQPGIGMGLAIVRLWVQRMGGSIVLESQPGMGTRMHLQLP 672


>gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729
           [Herbaspirillum seropedicae SmR1]
          Length = 765

 Score = 54.3 bits (129), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 13/128 (10%)

Query: 98  LSQILLTLLDNAAHAVRERGSEGRVSIRMRAADEPAGRPAQKAAIIEIADNGSGIAPELL 157
           L Q+L  LL NA    +     G V + M A  + +G P++      I D G GI+PE L
Sbjct: 464 LKQVLGNLLSNAIKFTQA----GHVQLSMSARQDESG-PSRWRLFFAITDTGIGISPEAL 518

Query: 158 QRLGR------APVASSSGGSGIGLMLAFASAAHLGGKLRLYSTPGQGT--CAELRLPLS 209
           Q+L R      + ++   GG+G+GL ++      +GG +   S PG+ T    E+  P +
Sbjct: 519 QQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQSIPGESTRFSFEILCPEA 578

Query: 210 AMPSPGPA 217
           + P+P P 
Sbjct: 579 STPAPEPV 586


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 711,819
Number of extensions: 28751
Number of successful extensions: 202
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 6
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)