BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0118.p
         (217 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311910|ref|YP_003776002.1| transmembrane sensor histidine ...   397   e-112
gi|300311774|ref|YP_003775866.1| two component sensor histidine ...    83   2e-17

>gi|300311910|ref|YP_003776002.1| transmembrane sensor histidine
           kinase transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 443

 Score =  397 bits (1021), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/203 (99%), Positives = 202/203 (99%)

Query: 1   MFSSPRPRSPASPFPTQHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIG 60
           MFSSPR RSPASPFPTQHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIG
Sbjct: 1   MFSSPRLRSPASPFPTQHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIG 60

Query: 61  LQALLNGATWLRLRWTRPAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAG 120
           LQALLNGATWLRLRWTRPAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAG
Sbjct: 61  LQALLNGATWLRLRWTRPAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAG 120

Query: 121 AASLAWPYALLLALCALGAYSGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWF 180
           AASLAWPYALLLALCALGAYSGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWF
Sbjct: 121 AASLAWPYALLLALCALGAYSGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWF 180

Query: 181 VSRIAAAVRSRETELARARERQL 203
           VSRIAAAVRSRETELARARERQL
Sbjct: 181 VSRIAAAVRSRETELARARERQL 203


>gi|300311774|ref|YP_003775866.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 14/197 (7%)

Query: 12  SPFPTQHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWL 71
           +P   Q++LL  L  LRW  V G++  +A       + LP+P +L ++      N A+ L
Sbjct: 26  NPAGHQNMLL--LIQLRWLAVLGQVSTIAFVVLVFDLHLPLPHMLEVLSCLVAFNIASHL 83

Query: 72  RLRWTRPAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASL----AWP 127
           R    R A   ELFL LL+D+AVLT  LY SGG TNPF   YL  +   A  L    +W 
Sbjct: 84  RWHERRIATNAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWA 143

Query: 128 YALLLALCALGAYSGLVYVYEPLHI---HDQGQAMAYHLAGMWINFSISALLITWFVSRI 184
              +  LC     +GL    EPL +   H+ G  ++ ++ G  I F ++A L+ +F++RI
Sbjct: 144 IVGVTMLC----LAGLALFSEPLALPPDHNAG-LLSLYVEGTLICFLLNAGLMVFFITRI 198

Query: 185 AAAVRSRETELARARER 201
           ++ +R+ +  LA  R+R
Sbjct: 199 SSNLRAGDALLADLRQR 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 471,718
Number of extensions: 13082
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 217
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 136
Effective length of database: 1,236,335
Effective search space: 168141560
Effective search space used: 168141560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)