BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0104.p
         (914 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311923|ref|YP_003776015.1| TonB-dependent outer membrane F...  1858   0.0  

>gi|300311923|ref|YP_003776015.1| TonB-dependent outer membrane Fe
           receptor protein [Herbaspirillum seropedicae SmR1]
          Length = 931

 Score = 1858 bits (4813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 910/914 (99%), Positives = 912/914 (99%)

Query: 1   MSLAILSVLPLLAQAADETPAGETTPGSATQEGSVKRLDSVVVTRKRSQTSAAVAGKQVE 60
           MSLAILSVLPLLAQAADETP GE TPGSATQEGSVKRLDSVVVTRKRSQTSAAVAGKQVE
Sbjct: 18  MSLAILSVLPLLAQAADETPVGEATPGSATQEGSVKRLDSVVVTRKRSQTSAAVAGKQVE 77

Query: 61  DRVMDSVTREQVERLPDSTVTDVVRRVAGVSVTFNPDNVNGRDKAQFIAIRGLDGSYNNV 120
           DRVMDSVTREQVERLPDSTVTDVVRRVAGVSVTFNPDNVNGRDKAQFIAIRGLDGSYNNV
Sbjct: 78  DRVMDSVTREQVERLPDSTVTDVVRRVAGVSVTFNPDNVNGRDKAQFIAIRGLDGSYNNV 137

Query: 121 TINGAPMASVDQTTRSARTNMLPASMVKEVQVFKTWTPDMDPNAVGGSVNIVSRSAFDNG 180
           TINGAPMASVDQTTRSARTNMLPASMVKEVQVFKTWTPDMDPNAVGGSVNIVSRSAFDNG
Sbjct: 138 TINGAPMASVDQTTRSARTNMLPASMVKEVQVFKTWTPDMDPNAVGGSVNIVSRSAFDNG 197

Query: 181 GKPTFSATGAVGHAAGSGKVASGAEGLAKKSDVTFSNTFGPDQRFGYVISANFEKENTVS 240
           GKPTFSATGAVGHAAG+GKVASGAEGLAKKSDVTFSNTFGPDQRFGYVISANFEKENTVS
Sbjct: 198 GKPTFSATGAVGHAAGTGKVASGAEGLAKKSDVTFSNTFGPDQRFGYVISANFEKENTVS 257

Query: 241 IGHMTTDNIFYNYYNANGSIANPASSGGPNTGNGFPVPQQFKYWQHLKNSETSGFNAKLE 300
           IGHMTTDNIFYNYYNANGSIANPASSGGPNTGNGFPVPQQFKYWQHLKNSETSGFNAKLE
Sbjct: 258 IGHMTTDNIFYNYYNANGSIANPASSGGPNTGNGFPVPQQFKYWQHLKNSETSGFNAKLE 317

Query: 301 GRFTPDLNGFVGFGYNSDSTHILRNETFIDDSRSTGNNPVQNQTPTSGQFALGEAEAGYA 360
           GRFTPDLNGFVGFGYNSDSTHILRNETFIDDSRSTGNNPVQNQTPTSGQFALGEAEAGYA
Sbjct: 318 GRFTPDLNGFVGFGYNSDSTHILRNETFIDDSRSTGNNPVQNQTPTSGQFALGEAEAGYA 377

Query: 361 ASTIKRTTSVLQGGLDWKLDDSQVLSLRSSFSQAKHREPRELAKYIFANFAYPGAGSAPV 420
           ASTIKRTTSVLQGGLDWKLDDSQVLSLRSSFSQAKHREPRELAKYIFANFAYPGAGSAPV
Sbjct: 378 ASTIKRTTSVLQGGLDWKLDDSQVLSLRSSFSQAKHREPRELAKYIFANFAYPGAGSAPV 437

Query: 421 LSGTNALGMSYNTSGFEPSVALNNPSNFTNLNNWQAYYWRKEMVKIDDQVGDVKLDYRWN 480
           LSGTNALGMSYNTSGFEPSVALNNPSNFTNLNNWQAYYWRKEMVKIDDQVGDVKLDYRWN
Sbjct: 438 LSGTNALGMSYNTSGFEPSVALNNPSNFTNLNNWQAYYWRKEMVKIDDQVGDVKLDYRWN 497

Query: 481 MDQDARGLGAGVGVDYRRLEHSYDYVNNQYYPTSGGLTLAGNGSVSSTIMPYSGGLPFIL 540
           MDQDARGLGAGVGVDYRRLEHSYDYVNNQYYPTSGGLTLAGNGSVSSTIMPYSGGLPFIL
Sbjct: 498 MDQDARGLGAGVGVDYRRLEHSYDYVNNQYYPTSGGLTLAGNGSVSSTIMPYSGGLPFIL 557

Query: 541 VNGGQAWQQFAANQGQIAASSGNSVNSLQSNYSHSEQTAALYAMASYRTDQWSGLFGLRQ 600
           VNGGQAWQQFAANQGQIAASSGNSVNSLQSNYSHSEQTAALYAMASYRTDQWSGLFGLRQ
Sbjct: 558 VNGGQAWQQFAANQGQIAASSGNSVNSLQSNYSHSEQTAALYAMASYRTDQWSGLFGLRQ 617

Query: 601 DNTNHSTTGNVRNVSNGATTWASQTKDSSYRYLLPAASLIFSATEDVKLKLAASKTIGRP 660
           DNTNHSTTGNVRNVSNGATTWASQTKDSSYRYLLPAASLIFSAT+DVKLKLAASKTIGRP
Sbjct: 618 DNTNHSTTGNVRNVSNGATTWASQTKDSSYRYLLPAASLIFSATDDVKLKLAASKTIGRP 677

Query: 661 NFDAYAPNTTINQNTDGSVTVTQGNPDIKPRESTNLDASAEWYLPRSSLLSVALFNKKIK 720
           NFDAYAPNTTINQNTDGSVTVTQGNPDIKPRESTNLDASAEWYLPRSSLLSVALFNKKIK
Sbjct: 678 NFDAYAPNTTINQNTDGSVTVTQGNPDIKPRESTNLDASAEWYLPRSSLLSVALFNKKIK 737

Query: 721 NEIYTLSSQGSLFYNGATRAASISQPVNASSSRINGVELSYVQGSLGWISPALQGLGFSA 780
           NEIYTLSSQGSLFYNGATRAASISQPVNASSSRINGVELSYVQGSLGWISPALQGLGFSA
Sbjct: 738 NEIYTLSSQGSLFYNGATRAASISQPVNASSSRINGVELSYVQGSLGWISPALQGLGFSA 797

Query: 781 NLSFFDGRLNAAASNGGTRTIQNLVNQPDQIRNLTVFYNYQKLDVSAAYNWTGRSLRLVD 840
           NLSFFDGRLNAAASNGGTRTIQNLVNQPDQIRNLTVFYNYQKLDVSAAYNWTGRSLRLVD
Sbjct: 798 NLSFFDGRLNAAASNGGTRTIQNLVNQPDQIRNLTVFYNYQKLDVSAAYNWTGRSLRLVD 857

Query: 841 SSLASRDVYWQARKQIDLQARYDLGQGWRAFAEVANLTNSPVTSVTGPNKDLLKDTFSMG 900
           SSLASRDVYWQARKQIDLQARYDLGQGWRAFAEVANLTNSPVTSVTGPNKDLLKDTFSMG
Sbjct: 858 SSLASRDVYWQARKQIDLQARYDLGQGWRAFAEVANLTNSPVTSVTGPNKDLLKDTFSMG 917

Query: 901 RMIWVGLNYSPKDL 914
           RMIWVGLNYSPKDL
Sbjct: 918 RMIWVGLNYSPKDL 931


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.128    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,866,737
Number of extensions: 122188
Number of successful extensions: 277
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 1
Length of query: 914
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 820
Effective length of database: 1,174,780
Effective search space: 963319600
Effective search space used: 963319600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 135 (56.6 bits)