BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0095.p (542 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II ... 1075 0.0 gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 223 2e-59 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 213 3e-56 gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis tra... 200 3e-52 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 196 3e-51 >gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/542 (99%), Positives = 541/542 (99%) Query: 1 VNAGVVPANNKENIVQGKLSVTARLGLLLALLCASVLLLAWRDMLGMASSNDKLKYVYED 60 +NAGVVPANNKENIVQGKLSVTARLGLLLALLCASVLLLAWRDMLGMASSNDKLKYVYED Sbjct: 1 MNAGVVPANNKENIVQGKLSVTARLGLLLALLCASVLLLAWRDMLGMASSNDKLKYVYED 60 Query: 61 RTMALIHIARVRDALYQNRDLMGRALMMANLRTDPNADDSVSAARIKQNLGGMAALDASF 120 RTMALIHIARVRDALYQNRDLMGRALMMANLRTDPNADDSVSAARIKQNLGGMAALDASF Sbjct: 61 RTMALIHIARVRDALYQNRDLMGRALMMANLRTDPNADDSVSAARIKQNLGGMAALDASF 120 Query: 121 REGWQAYRDTRLSPEETTLAGRFEERWQTYLSERDQIITLIANGEPLQANRRWTALTTQL 180 REGW+AYRDTRLSPEETTLAGRFEERWQTYLSERDQIITLIANGEPLQANRRWTALTTQL Sbjct: 121 REGWKAYRDTRLSPEETTLAGRFEERWQTYLSERDQIITLIANGEPLQANRRWTALTTQL 180 Query: 181 ADLASLLSKLGRLQESLTGSAYEEARNEYQRLRTHNLEIAGLTLALGLALALWIIAGVRR 240 ADLA LLSKLGRLQESLTGSAYEEARNEYQRLRTHNLEIAGLTLALGLALALWIIAGVRR Sbjct: 181 ADLAGLLSKLGRLQESLTGSAYEEARNEYQRLRTHNLEIAGLTLALGLALALWIIAGVRR 240 Query: 241 ELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMHTMRARLTEIMRNVTLSTQAL 300 ELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMHTMRARLTEIMRNVTLSTQAL Sbjct: 241 ELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMHTMRARLTEIMRNVTLSTQAL 300 Query: 301 GVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQAIQQTGEHARRTNQIAVAAASDA 360 GVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQAIQQTGEHARRTNQIAVAAASDA Sbjct: 301 GVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQAIQQTGEHARRTNQIAVAAASDA 360 Query: 361 DKSGAAVQTTVDAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEVR 420 DKSGAAVQTTVDAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEVR Sbjct: 361 DKSGAAVQTTVDAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEVR 420 Query: 421 KLAERSQSSAHEISVIAQQSVELAEQTSQRLVEGTLQGIRQASQQINQITLSSRMQEEGV 480 KLAERSQSSAHEISVIAQQSVELAEQTSQRLVEGTLQGIRQASQQINQITLSSRMQEEGV Sbjct: 421 KLAERSQSSAHEISVIAQQSVELAEQTSQRLVEGTLQGIRQASQQINQITLSSRMQEEGV 480 Query: 481 AEIGVAVTQLNDTTQRNAAASEELAITAEAMAERARELNAQLAYFRLEQSQQGQPGQRPA 540 AEIGVAVTQLNDTTQRNAAASEELAITAEAMAERARELNAQLAYFRLEQSQQGQPGQRPA Sbjct: 481 AEIGVAVTQLNDTTQRNAAASEELAITAEAMAERARELNAQLAYFRLEQSQQGQPGQRPA 540 Query: 541 AA 542 AA Sbjct: 541 AA 542 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 223 bits (569), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 142/359 (39%), Positives = 224/359 (62%), Gaps = 3/359 (0%) Query: 178 TQLADLASLLSKLGRLQESLTGSAYEEARNEYQRLRTHNLEIAGLTLALGLALALWI-IA 236 T L S ++ RL + T + +A +Y L + ++ + A LW+ Sbjct: 198 TLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKIFWLLAASVVVLFA-CLWLSYR 256 Query: 237 GVRRELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMHTMRARLTEIMRNVTLS 296 +R ++GGEP A ++R++A+G+L V V L D+ S+LY+ M + T+++ +V+ + Sbjct: 257 IIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQQMINKWTDVIGDVSGT 316 Query: 297 TQALGVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQAIQQTGEHARRTNQIAVAA 356 +L +S Q+++++ AL+ +++QAA VEE ++ + I Q ++AR T+ IA + Sbjct: 317 ATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIAQNADNARTTDGIASLS 376 Query: 357 ASDADKSGAAVQTTVDAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVA 416 AS A + G AV+ TV AM+ IA ++G+IDDIAYQTNLLALNAAIEAARAGEHG+GF+VVA Sbjct: 377 ASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVA 436 Query: 417 AEVRKLAERSQSSAHEISVIAQQSVELAEQTSQRLVEGTLQGIRQASQQINQITLSSRMQ 476 AEVRKLAERSQS+A EI +A+ SV LAE+ L+ + IR+ + + +I +S Q Sbjct: 437 AEVRKLAERSQSAAQEIIAVAETSVGLAEKAGG-LLNQMVPSIRKTADLVQEIAAASHEQ 495 Query: 477 EEGVAEIGVAVTQLNDTTQRNAAASEELAITAEAMAERARELNAQLAYFRLEQSQQGQP 535 G+ +I AV Q+ TTQ A+ASEEL+ T+E M+ +A L + +F++ + ++ P Sbjct: 496 STGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFFQVGEPRKNAP 554 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 213 bits (542), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 217/359 (60%), Gaps = 15/359 (4%) Query: 187 LSKLGRLQESLTGSAYEEARNEYQRLRTHNLEIAGLTLALGLALALWIIAGVRRELGGEP 246 L +LGR ++ L A A Y+ + T + ++ L +A A I+ V +LGGEP Sbjct: 164 LDELGRFEDELNNQASAAADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEP 223 Query: 247 AYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMHTMRARLTEIMRNVTLSTQALGVSSRQ 306 A A ++ QIA GNL V + L D+ SL+ ++ MRA+LT I+ + S +++ ++ Q Sbjct: 224 AQAQELAAQIAQGNLAVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQ 283 Query: 307 LNATAHALAQASSEQAAAVEEVHGAIASMNQAIQQTGEHARRTNQIAVAAASDADKSGAA 366 + L++ + EQAA++EE ++ + ++Q ++A + +Q+A +A+ A K G Sbjct: 284 IAVGNLDLSRRTEEQAASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEV 343 Query: 367 VQTTVDAMRGIARQ-------VGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEV 419 V+ V M+ I++ + ++ IA+QTN+LALNAA+EAARAGE GRGF+VVA EV Sbjct: 344 VERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEV 403 Query: 420 RKLAERSQSSAHEISVIAQQSVELAEQTSQRLVEG---TLQGIRQASQQIN----QITLS 472 R LA+RS SSA EI + + SV+ E Q+LV+ T+ + ++ QQ+N +IT + Sbjct: 404 RSLAQRSASSAKEIRGLIESSVQHVE-AGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAA 462 Query: 473 SRMQEEGVAEIGVAVTQLNDTTQRNAAASEELAITAEAMAERARELNAQLAYFRLEQSQ 531 S Q G+++I +A++Q+++ TQ+NAA EE A A++MA++A L +A FR+EQ Q Sbjct: 463 SNEQSSGISQINIAISQMDEVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRIEQPQ 521 >gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 200 bits (508), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 124/310 (40%), Positives = 196/310 (63%), Gaps = 1/310 (0%) Query: 219 IAGLTLALGLALALWIIAGVRRELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYA 278 +AG L + L + + R++GGEP ++++++DG+L + L+ R S+++A Sbjct: 199 VAGGVLLILLGAGWLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQTITLKPGCRDSMMHA 258 Query: 279 MHTMRARLTEIMRNVTLSTQALGVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQA 338 + M RL +++ V + L ++ +++ATA +L++AS+EQA VE+ A+A ++ Sbjct: 259 IQKMMTRLAQVVGEVRGNADGLVSTAEEVSATAQSLSRASTEQANGVEQTSEALAQIHAL 318 Query: 339 IQQTGEHARRTNQIAVAAASDADKSGAAVQTTVDAMRGIARQVGVIDDIAYQTNLLALNA 398 +Q T ++AR T+QIA AAA +A + V+ V A++ IA ++ VIDDIAYQTNLLALNA Sbjct: 319 LQSTAQNARLTDQIAAAAALEARQCAETVKQMVAAIQQIAGKIAVIDDIAYQTNLLALNA 378 Query: 399 AIEAARAGEHGRGFSVVAAEVRKLAERSQSSAHEISVIAQQSVELAEQTSQRLVEGTLQG 458 IEAA AGEHG GF+VVAAEVR+LAERSQS+A EI +A+ +V LA ++R + + Sbjct: 379 TIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARANVTLA-CAAERQLSDMVPT 437 Query: 459 IRQASQQINQITLSSRMQEEGVAEIGVAVTQLNDTTQRNAAASEELAITAEAMAERAREL 518 I + S + I SS Q V++I A +QL Q+N+ +SEELA+T+E + RA L Sbjct: 438 ITRTSVLVQDIVQSSEQQSTAVSQISTAASQLAQVIQQNSLSSEELAVTSEELNRRALLL 497 Query: 519 NAQLAYFRLE 528 + +F+ + Sbjct: 498 QTAVGFFQCQ 507 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 196 bits (499), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 123/331 (37%), Positives = 204/331 (61%), Gaps = 15/331 (4%) Query: 226 LGLALALWIIAGVRRELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMHTMRAR 285 + + +A+ + G+ ++LGGEP YAA I +QIADG+L V ++ D SSLL+A+ MR Sbjct: 198 ISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDS 257 Query: 286 LTEIMRNVTLSTQALGVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQAIQQTGEH 345 L I+ V T + +S ++ + L+ + +QA+++EE A+ + ++Q ++ Sbjct: 258 LVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADN 317 Query: 346 ARRTNQIAVAAASDADKSG---AAVQTTVDAMRGIARQ----VGVIDDIAYQTNLLALNA 398 A++ +Q+AV+A+ A + G A V TT+D + +R+ + VID IA+QTN+LALNA Sbjct: 318 AKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNA 377 Query: 399 AIEAARAGEHGRGFSVVAAEVRKLAERSQSSAHEISVIAQQSV-------ELAEQTSQRL 451 A+EAARAGE GRGF+VVA+EVR LA+RS ++A EI+ + SV L EQ Q + Sbjct: 378 AVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTM 437 Query: 452 VEGTLQGIRQASQQINQITLSSRMQEEGVAEIGVAVTQLNDTTQRNAAASEELAITAEAM 511 E + +++ + + +I+++S+ Q G+ ++ A+T +++ TQ+N+A EE A A +M Sbjct: 438 -ENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSM 496 Query: 512 AERARELNAQLAYFRLEQSQQGQPGQRPAAA 542 E+A L+ +A FRL+ Q Q G A+A Sbjct: 497 KEQAGALSGLVATFRLDAQQARQSGYSQASA 527 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.126 0.338 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,151,891 Number of extensions: 37785 Number of successful extensions: 485 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 71 Length of query: 542 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 452 Effective length of database: 1,193,720 Effective search space: 539561440 Effective search space used: 539561440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)