BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0080.p (305 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311946|ref|YP_003776038.1| branched-chain amino acid ABC t... 580 e-167 gi|300313996|ref|YP_003778088.1| urea ABC transporter permease [... 214 6e-57 gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC t... 99 4e-22 gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 98 6e-22 gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC tr... 95 6e-21 >gi|300311946|ref|YP_003776038.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 580 bits (1496), Expect = e-167, Method: Compositional matrix adjust. Identities = 293/293 (100%), Positives = 293/293 (100%) Query: 13 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQ 72 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQ Sbjct: 1 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQ 60 Query: 73 PFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKE 132 PFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKE Sbjct: 61 PFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKE 120 Query: 133 VSATLPDWLMGSFKPTDDIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRV 192 VSATLPDWLMGSFKPTDDIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRV Sbjct: 121 VSATLPDWLMGSFKPTDDIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRV 180 Query: 193 MSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQS 252 MSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQS Sbjct: 181 MSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQS 240 Query: 253 LIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVKVRK 305 LIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVKVRK Sbjct: 241 LIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVKVRK 293 >gi|300313996|ref|YP_003778088.1| urea ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 538 Score = 214 bits (545), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 129/294 (43%), Positives = 179/294 (60%) Query: 11 FAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPA 70 FA + F G+S+ VLLL ALGLAI FG MG+INMAHGE L IGAY TY+ + + P Sbjct: 242 FAGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPG 301 Query: 71 LQPFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGA 130 Y VA+ +F VA VG E L+I LY RPL+TLL TWG+SL + Q RSIFGA Sbjct: 302 AIDAYLVVALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFGA 361 Query: 131 KEVSATLPDWLMGSFKPTDDIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQN 190 + V P W+ G + + N + ++ + + A++++L ++R GL VRA QN Sbjct: 362 QNVEVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQN 421 Query: 191 RVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGA 250 R M+ VG++T K+D TF LGCG+AG+ G A + +G+ GP G YIVD+F+VVV GG Sbjct: 422 RRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGV 481 Query: 251 QSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVKVR 304 L GT+ +AF + + E +AK+ L +I+ + RPQGLF++K R Sbjct: 482 GQLAGTVIAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKGR 535 >gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 99.0 bits (245), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 87/284 (30%), Positives = 148/284 (52%), Gaps = 11/284 (3%) Query: 16 FNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQPFY 75 F+G++ +L L+++GL++ G M IN+AHG F +G Y+ L L P Sbjct: 10 FDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTL--LNGMGVP------ 61 Query: 76 FFVAIVLSFAVAYGVGYLTELLLISRLYK-RPLDTLLATWGLSLAMQQTFRSIFGAKEVS 134 F + L+F A VG + E L RLYK LD +L + GL+ +G + Sbjct: 62 FLATLPLAFIAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQP 121 Query: 135 ATLPDWLMGSFKPTDDIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRVMS 194 LPDWL G +++ +F++G+ V++T A+ +L+ R+R+G Q+RA++ N+V + Sbjct: 122 VVLPDWLRGQIS-LLGLEVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAA 180 Query: 195 GAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQSLI 254 +GIN +V TFALG G+AG+ G + PT Y+V LVV GGA ++ Sbjct: 181 AGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIK 240 Query: 255 GTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGL 298 G + +A + ++++ + + ++++L+L P GL Sbjct: 241 GPLLAALILGVFDVAGKYYVP-EIGAFVIYGLMVVLLILFPAGL 283 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 98.2 bits (243), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 80/275 (29%), Positives = 141/275 (51%), Gaps = 13/275 (4%) Query: 27 LMALGLAIIFGQMGVINMAHGEFLTIGAYITYL-LSHLTTTYAPALQPFYFFVAIVLSFA 85 +++LGLA+IFG + VIN AHG +GA++ ++ LS+L Y +V ++++ Sbjct: 27 MLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGLSYLGLNY---------WVMLIVAPI 77 Query: 86 VAYGVGYLTELLLISRLYK-RPLDTLLATWGLSLAMQQTFRSIFGAKEVSATLPDWLMGS 144 + G + E ++ LYK L LL T+G++L ++ FRSI+G ++PD L G+ Sbjct: 78 LVGAFGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPYSVPDLLQGA 137 Query: 145 FKPTDDIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRVMSGAVGINTRKV 204 + +P +++ ++++ A + ++ ++R G +RA +N + A GIN + Sbjct: 138 TN-LGFMVLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGTENPKLVEAFGINVPLM 196 Query: 205 DRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQSLIGTIASAFSIA 264 T+ G +A AG + P GS I+ F VVV GG S++G+I + + Sbjct: 197 VTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITGLVLG 256 Query: 265 QTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLF 299 + F A V+ + I +LM+RP GLF Sbjct: 257 LIEGLTRVFYPELSATVVFIIMAI-VLMVRPAGLF 290 >gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 308 Score = 95.1 bits (235), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 148/302 (49%), Gaps = 28/302 (9%) Query: 14 QGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQP 73 Q NGLS+ + L+A+G +++G +G+IN AHGE I +Y+ L T A +Q Sbjct: 11 QLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYV-----GLVTLTAIGVQS 65 Query: 74 FYFFVAI-----VLSFAVAYGVGYLTELLLISRLYKRPLD------TLLATWGLSLAMQQ 122 Y + ++S V G+ E R+ RPL L++ G+S+ +Q Sbjct: 66 GYPLPLLLGGALIVSVLVTGLYGWTVE-----RVAYRPLRGGPRLVPLISAIGMSIFLQN 120 Query: 123 TFRSIFGAKEVSATLPDWLMGS--FKPTDD--IDIPLNGLFMMGLTVLLTGAIFVLLFRS 178 + GA+++S +P + G+ F+ D + IP + + ++G+T++L A+ + + RS Sbjct: 121 YVQIGQGARDMS--VPVLISGALEFQMGSDFTVTIPYSRMVIVGVTLVLMVALTLFIARS 178 Query: 179 RWGLQVRATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFT-TIGSTGPTSGSLY 237 R G RA ++ M+ +GI+T KV TF LG +A V G TIG P G + Sbjct: 179 RMGRACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIA 238 Query: 238 IVDTFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQG 297 + F V GG S+ G + + ++ A +L V++ ++LIL+ RP G Sbjct: 239 GIKAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTG 298 Query: 298 LF 299 L Sbjct: 299 LL 300 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.141 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 760,718 Number of extensions: 28223 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 19 Length of query: 305 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 220 Effective length of database: 1,217,395 Effective search space: 267826900 Effective search space used: 267826900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)