BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0072.p
         (336 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311954|ref|YP_003776046.1| cobalamin biosynthesis protein ...   671   0.0  
gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotrans...    67   2e-12

>gi|300311954|ref|YP_003776046.1| cobalamin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/336 (100%), Positives = 336/336 (100%)

Query: 1   MLEHGGNLNDAARHYGRARAQWLDVSTGINPQPYPAPAPLADAWHRLPEPSAALEQAACD 60
           MLEHGGNLNDAARHYGRARAQWLDVSTGINPQPYPAPAPLADAWHRLPEPSAALEQAACD
Sbjct: 1   MLEHGGNLNDAARHYGRARAQWLDVSTGINPQPYPAPAPLADAWHRLPEPSAALEQAACD 60

Query: 61  YYGAPRMLAVAGTQAAIQALPQLRLRRDGRPAQVVVAAPIYAEHAHCWRRCGHEVSEVPY 120
           YYGAPRMLAVAGTQAAIQALPQLRLRRDGRPAQVVVAAPIYAEHAHCWRRCGHEVSEVPY
Sbjct: 61  YYGAPRMLAVAGTQAAIQALPQLRLRRDGRPAQVVVAAPIYAEHAHCWRRCGHEVSEVPY 120

Query: 121 EALDQAVQSPSCQVLVLCNPNNPTGALVEPERLLRWAAQLAERGGWLVVDEAFGDTLTHY 180
           EALDQAVQSPSCQVLVLCNPNNPTGALVEPERLLRWAAQLAERGGWLVVDEAFGDTLTHY
Sbjct: 121 EALDQAVQSPSCQVLVLCNPNNPTGALVEPERLLRWAAQLAERGGWLVVDEAFGDTLTHY 180

Query: 181 SVAAHTPQTGLIVLRSVGKFFGLAGLRLGFVAAAPALLAELADWLGPWTISGPAQQIGCA 240
           SVAAHTPQTGLIVLRSVGKFFGLAGLRLGFVAAAPALLAELADWLGPWTISGPAQQIGCA
Sbjct: 181 SVAAHTPQTGLIVLRSVGKFFGLAGLRLGFVAAAPALLAELADWLGPWTISGPAQQIGCA 240

Query: 241 ALRDRDWQAQTRQRLQAQGQRLQQLLARHGIAAQGTALFQWWPEPQAQAFHACMAEAGVW 300
           ALRDRDWQAQTRQRLQAQGQRLQQLLARHGIAAQGTALFQWWPEPQAQAFHACMAEAGVW
Sbjct: 241 ALRDRDWQAQTRQRLQAQGQRLQQLLARHGIAAQGTALFQWWPEPQAQAFHACMAEAGVW 300

Query: 301 VRLFTRGAGGIRIGLPPDDAGWQRLHEALTTWSQRG 336
           VRLFTRGAGGIRIGLPPDDAGWQRLHEALTTWSQRG
Sbjct: 301 VRLFTRGAGGIRIGLPPDDAGWQRLHEALTTWSQRG 336


>gi|300313353|ref|YP_003777445.1| histidinol-phosphate
           aminotransferase 1 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 372

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 111/255 (43%), Gaps = 35/255 (13%)

Query: 32  QPYPAPAPL---------ADAWHRLPEPS-AALEQAACDYYGAP---RMLAVAGTQAAIQ 78
            PY  PA L         A   +R P PS  AL+ A C   G P    +L   G+   I 
Sbjct: 47  NPYLLPAELREQLAQRLAALELNRYPVPSYTALKAAICKGLGVPAGYDVLLGNGSDELIT 106

Query: 79  ALPQLRLRRDGRPAQVVVAAPIYAEHAHCWRRCGHEVSEVPYEALDQAVQSPSCQVLV-- 136
            L  +   + GR   ++   P +  +    +  G E   VP  A D ++  P+    +  
Sbjct: 107 LL-SVACAQPGR--TILAPEPGFVMYGVSAKMAGLEYVGVPLCA-DLSLDLPAMLAAMEA 162

Query: 137 -------LCNPNNPTGALVEPERLLRWAAQLAERGGWLVVDEAFGDTLTHYSVAAHTPQT 189
                  L  PNNPTG L E   +LR   + A   G +VVDEA+        + A     
Sbjct: 163 HKPVITWLGYPNNPTGTLYEMADVLRIV-EAAAPYGLVVVDEAYQPFAASTLMPALPQHN 221

Query: 190 GLIVLRSVGKFFGLAGLRLGFVAAAPALLAELADWLGPWTISGPAQQIGCAALRDRDWQA 249
            L+++R+V K  GLAG+RLG+++AAPALL EL     P+ ++   +      L   D   
Sbjct: 222 NLVLMRTVSKL-GLAGIRLGYLSAAPALLRELDKVRPPYNVNVLTEAAALFMLEHLDV-- 278

Query: 250 QTRQRLQAQGQRLQQ 264
                LQAQ  RL+Q
Sbjct: 279 -----LQAQAARLRQ 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,166,516
Number of extensions: 50364
Number of successful extensions: 217
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 3
Length of query: 336
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,212,660
Effective search space: 303165000
Effective search space used: 303165000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)