BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0071.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311955|ref|YP_003776047.1| cobalamin biosynthesis CobD/Cbi...   597   e-172
gi|300310842|ref|YP_003774934.1| cobalamin biosynthesis transmem...    98   1e-21

>gi|300311955|ref|YP_003776047.1| cobalamin biosynthesis CobD/CbiB
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  597 bits (1538), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 313/317 (98%), Positives = 313/317 (98%)

Query: 1   MLIGLSWPWLAVLMALGLALDLRLGEARRWHPLVGFGRLAQRIEAALNRAPGLRLRGVLA 60
           MLIGLSWPWLAVLMALGLALDLRLGEARRWHPLVGFGRLAQRIEAALNRAPGLRLRGVLA
Sbjct: 1   MLIGLSWPWLAVLMALGLALDLRLGEARRWHPLVGFGRLAQRIEAALNRAPGLRLRGVLA 60

Query: 61  WALAVLPLVLLAAWLIAQTPWWLAALLHAGLLYFCIGLRSLREHTLPIAQALAAGELEQA 120
           WALAVLP VLLAAWLIAQTPWWLAALLHAGLLYFCIGLRSLREHTLPIAQAL AGEL QA
Sbjct: 61  WALAVLPPVLLAAWLIAQTPWWLAALLHAGLLYFCIGLRSLREHTLPIAQALGAGELAQA 120

Query: 121 RRLTAWIVSRDTRSASEQELAKAGVESLLENGNDAVFGTLFWFLLAGGPGALLFRLSNTL 180
           RRLTAWIVSRDTRSASEQELAKAGVESLLENGNDAVFGTLFWFLLAGGPGALLFRLSNTL
Sbjct: 121 RRLTAWIVSRDTRSASEQELAKAGVESLLENGNDAVFGTLFWFLLAGGPGALLFRLSNTL 180

Query: 181 DAMWGYRNVRFLYFGWAAARIDDALNWCPARLTALSYAVLGQRRQALACWKEQAPAWSSP 240
           DAMWGYRN RFLYFGWAAARIDDALNWCPARLTALSYAVLGQRRQALACWKEQAPAWSSP
Sbjct: 181 DAMWGYRNARFLYFGWAAARIDDALNWCPARLTALSYAVLGQRRQALACWKEQAPAWSSP 240

Query: 241 NAGPVMAAGAGALGLALGGAAVYDGEVEQRPPLGCGVAPQGADIVRAWRLVAMSAALWMA 300
           NAGPVMAAGAGALGLALGGAAVYDGEVEQRPPLGCGVAPQGADIVRAWRLVAMSAALWMA
Sbjct: 241 NAGPVMAAGAGALGLALGGAAVYDGEVEQRPPLGCGVAPQGADIVRAWRLVAMSAALWMA 300

Query: 301 VVAAVALPWLLGGALHA 317
           VVAAVALPWLLGGALHA
Sbjct: 301 VVAAVALPWLLGGALHA 317


>gi|300310842|ref|YP_003774934.1| cobalamin biosynthesis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 2/170 (1%)

Query: 91  LLYFCIGLRSLREHTLPIAQALAAGELEQARRLTAWIVSRDTRSASEQELAKAGVESLLE 150
           ++Y  +G R    +   I  AL +G+   AR L A    +DT      E+++   E  L 
Sbjct: 84  VVYLTLGFRHYSHYFTSIQLALNSGDEMTARALLAEWTRQDTTGMDVSEISRIASERALI 143

Query: 151 NGNDAVFGTLFWFLLAGGPG-ALLFRLSNTLDAMWGY-RNVRFLYFGWAAARIDDALNWC 208
             +  VFG  FWFL+  GP  A+++R++  L   W    +++F  FG  AA+    ++W 
Sbjct: 144 TTHRHVFGVFFWFLMPVGPALAVMYRVAEYLSRAWNEPDHMKFEAFGRFAAQAFYWIDWI 203

Query: 209 PARLTALSYAVLGQRRQALACWKEQAPAWSSPNAGPVMAAGAGALGLALG 258
           PARLTA ++AV+G    A+  W+  A  W   +AG ++AAG GA+G+  G
Sbjct: 204 PARLTAAAFAVVGNFEDAIYAWRNFASRWDDESAGIILAAGGGAMGVRFG 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 664,851
Number of extensions: 19653
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)