BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0066.p (375 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311960|ref|YP_003776052.1| G3E family GTPase [Herbaspirill... 644 0.0 gi|300310263|ref|YP_003774355.1| cobalamin synthesis P47K protei... 99 7e-22 gi|300311859|ref|YP_003775951.1| CobW/P47K family protein [Herba... 94 2e-20 gi|300314043|ref|YP_003778135.1| cobalamin synthesis protein/P47... 79 5e-16 >gi|300311960|ref|YP_003776052.1| G3E family GTPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/375 (97%), Positives = 370/375 (98%) Query: 1 VVVSLPELATALPPIPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGDL 60 V +SLPELA ALPPIPVTVVTGFLGAGKTTLLRGL+QRRQSRRLALLINEFGEVAIDGDL Sbjct: 3 VALSLPELAPALPPIPVTVVTGFLGAGKTTLLRGLLQRRQSRRLALLINEFGEVAIDGDL 62 Query: 61 LRAEGDAQGQVQIQDFAHGLIAYGDDAHFVPAMLALAARRAQIDHVLIETSGLALPSAVM 120 LRAEGDAQGQVQIQDFAHGLIAYGDDAHFVPAMLALAARRAQIDHVLIETSGLALPSAVM Sbjct: 63 LRAEGDAQGQVQIQDFAHGLIAYGDDAHFVPAMLALAARRAQIDHVLIETSGLALPSAVM 122 Query: 121 EVLQGAELARHFVLDATLAVVDTPLLLEDAFASADAVGAATAQLFRQQLECADVVVLNKI 180 EVLQGAE+ARHFVLDATLAVVDTPLLLEDAFASADAVGAATAQLFRQQLECADVVVLNKI Sbjct: 123 EVLQGAEMARHFVLDATLAVVDTPLLLEDAFASADAVGAATAQLFRQQLECADVVVLNKI 182 Query: 181 DGMEEAPLLQAEQAVRALAPNVRFLELAYGARLDIRLALGLRLHQAGATVHHHYTPVSMP 240 DGMEEAPLLQAEQAVRALAPNVRFLELAYGARLDIRLALGLRLHQAGATVHHHYTPVSMP Sbjct: 183 DGMEEAPLLQAEQAVRALAPNVRFLELAYGARLDIRLALGLRLHQAGATVHHHYTPVSMP 242 Query: 241 GERAQVAPDQRRFNGHVHSGLGAHSHGLSTHKHFHEQDPGWQSFTLRSQAQQDAARLRQA 300 GERAQVAPDQRRFNGHVHSGLGAHSHGLSTHKHFHEQDPGWQSFTLRS A QDA RLRQA Sbjct: 243 GERAQVAPDQRRFNGHVHSGLGAHSHGLSTHKHFHEQDPGWQSFTLRSLAHQDAERLRQA 302 Query: 301 VAAAALAEPILRAKGFVHTDQGARLVQAVRARVVVAESGQGGGRGGSSELVFIGYHPSRA 360 VAAAALAEPILRAKGFVHTDQGARLVQAVRARVVVAESGQGGGRGGSSELVFIGYHPSRA Sbjct: 303 VAAAALAEPILRAKGFVHTDQGARLVQAVRARVVVAESGQGGGRGGSSELVFIGYHPSRA 362 Query: 361 KVARILSETTGVDWT 375 KVARILSETTGVDWT Sbjct: 363 KVARILSETTGVDWT 377 >gi|300310263|ref|YP_003774355.1| cobalamin synthesis P47K protein [Herbaspirillum seropedicae SmR1] Length = 413 Score = 98.6 bits (244), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 124/221 (56%), Gaps = 14/221 (6%) Query: 15 IPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGDLLRAEGD-AQGQVQI 73 IPVTV++GFLG+GKTTLL +++ R ++A+++N+ EV +DGD +R + +G ++ Sbjct: 17 IPVTVLSGFLGSGKTTLLNHILRNRAGMKVAVIVNDMSEVNMDGDDVRRNTELYRGNDEL 76 Query: 74 QDFAHGLIAYGDDAHFVPAMLALAARRAQIDHVLIETSGLALPSAVMEVL-----QGAEL 128 + ++G I A + + AL AR + D++LIE++G++ P V E G L Sbjct: 77 VEMSNGCICCTLRADLLEQVSAL-ARSGRFDYLLIESTGISEPIPVAETFAFLDSDGFSL 135 Query: 129 ARHFVLDATLAVVDTPLL---LEDAFASADAVGAAT---AQLFRQQLECADVVVLNKIDG 182 + LD + VV+ L D A A A GA+T + L +Q+E A+V++++++D Sbjct: 136 SELARLDTLVTVVNGETFEQQLADHVAIAQADGASTRPLSDLLIEQVEYANVILVSRVDL 195 Query: 183 MEEAPLLQAEQAVRALAPNVRFLELAYGARLDIRLALGLRL 223 ++ + + ++ L P R L +A+G +D+ L RL Sbjct: 196 IDASAFASLKAVLQKLNPTARILPMAHG-EVDLDQVLDTRL 235 >gi|300311859|ref|YP_003775951.1| CobW/P47K family protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 111/214 (51%), Gaps = 20/214 (9%) Query: 15 IPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGDLLRAEGD--AQGQVQ 72 +PVTV++GFLGAGKTTLL ++ R+ RR+A+++N+ EV ID L+R G A+ + + Sbjct: 13 LPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLARTEEK 72 Query: 73 IQDFAHGLIAYGDDAHFVPAMLALAARRAQIDHVLIETSGLALPSAVMEVL-----QGAE 127 + + ++G I + + L AR + D ++IE++G++ P V E GA Sbjct: 73 LVEMSNGCICCTLREDLLMEVRKL-ARERRFDQLVIESTGISEPLPVAETFTFTDEDGAS 131 Query: 128 LARHFVLDATLAVVDTPLLLEDAFASADAV-----------GAATAQLFRQQLECADVVV 176 L+ LD + VVD L+D ++S D++ L +Q+E DV+V Sbjct: 132 LSDVARLDTMVTVVDAFNFLKD-YSSQDSLDQRGQSMGEEDNRTVVDLLIEQIEFCDVIV 190 Query: 177 LNKIDGMEEAPLLQAEQAVRALAPNVRFLELAYG 210 LNK+D + L + + L P R + +G Sbjct: 191 LNKLDLVAADDLERLHAILHKLNPRARIVRAEFG 224 >gi|300314043|ref|YP_003778135.1| cobalamin synthesis protein/P47K family protein [Herbaspirillum seropedicae SmR1] Length = 388 Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 13/200 (6%) Query: 14 PIPVTVVTGFLGAGKTTLLRGLVQRRQSRRLALLINEFGEVAIDGDLLRAEGDAQGQVQI 73 PIPV+++TGFLG+GKTTLL L+ + + + ++INEFGE+ +D LL A + V++ Sbjct: 11 PIPVSLLTGFLGSGKTTLLNHLITQPEMKDTLVIINEFGEIGLD-HLLVAHSQEETIVEM 69 Query: 74 QDFAHGLIAYGDDAHFVPAMLALAAR--RAQIDHVLIETSGLALPSAVMEVLQ-GAELAR 130 GD + + A R + + V+IET+GLA P+ ++ L A +A Sbjct: 70 SSGCLCCTIRGDLKKTLKDITWRFAEGGRRKFNRVVIETTGLASPAPILHTLMTDAFIAE 129 Query: 131 HFVLDATLAVVDTPLLLEDAFASADAVGAATAQLFRQQLECADVVVLNKIDGMEEAPLLQ 190 + LD + VD + ++ D A QQ AD ++L K D ++ A L Sbjct: 130 RYRLDGVIVTVDA----VNGMSTLDHHEEAV-----QQAAVADRLLLTKTDLVDAATLAA 180 Query: 191 AEQAVRALAPNVRFLELAYG 210 + +R L P R L+ G Sbjct: 181 LQARLRTLNPGARQLQPQVG 200 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,001,976 Number of extensions: 39130 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 271 Number of HSP's successfully gapped: 4 Length of query: 375 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 288 Effective length of database: 1,207,925 Effective search space: 347882400 Effective search space used: 347882400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)