BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0063.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransfera...   526   e-151
gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III C-methyltr...    94   2e-20

>gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score =  526 bits (1356), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/258 (99%), Positives = 257/258 (99%)

Query: 1   MKVYFVGAGPGAADLITLRGARLLGQVRMVLYAGSLVPTALLEHCHPEAEIIDTAALDLE 60
           MKVYFVGAGPGAADLITLRGARLLGQVRMVLYAGSLVPTALLEHCHP AEIIDTAALDLE
Sbjct: 1   MKVYFVGAGPGAADLITLRGARLLGQVRMVLYAGSLVPTALLEHCHPAAEIIDTAALDLE 60

Query: 61  QQQACYVRAQEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSSFTAAAAAV 120
           QQQACYVRAQEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSSFTAAAAAV
Sbjct: 61  QQQACYVRAQEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSSFTAAAAAV 120

Query: 121 SAELTKPEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKKIVTDLLLH 180
           SAELTKPEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKKIVTDLLLH
Sbjct: 121 SAELTKPEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKKIVTDLLLH 180

Query: 181 YPPATPVTLVYRATWPEQRIYQGQLDKVLEENKRGEWNLTTMMLVGAALNKEQVAESSLY 240
           YPPATPVTLVYRATWPEQRIYQGQLDKVLEENKRGEWNLTTMMLVGAALNKEQVAESSLY
Sbjct: 181 YPPATPVTLVYRATWPEQRIYQGQLDKVLEENKRGEWNLTTMMLVGAALNKEQVAESSLY 240

Query: 241 SKDFTHLFRVVKKNKDAA 258
           SKDFTHLFRVVKKNKDAA
Sbjct: 241 SKDFTHLFRVVKKNKDAA 258


>gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III
           C-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 113/210 (53%), Gaps = 14/210 (6%)

Query: 3   VYFVGAGPGAADLITLRGARLLGQVRMVLYAGSLVPTALLEHCHPEAEIIDTAALDLEQQ 62
           V+ VG+GPGAADL+T+R ARLL Q  +VL+  +LV   +L  C P+A ++       ++ 
Sbjct: 25  VWLVGSGPGAADLLTVRAARLLAQAEIVLH-DALVTPDILALC-PQAVLVSVGKRSGQRS 82

Query: 63  QA------CYVRAQEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSSFTAA 116
            A        V A +Q   VVRL  GDP ++G   E+MR L+   I YE+VPG+++  AA
Sbjct: 83  TAQPVINQKLVEAAQQYRRVVRLKGGDPMLFGRADEEMRALEEHHIPYEIVPGITAALAA 142

Query: 117 AAAVSAELTKPEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKKIVTD 176
           A+A    LT+  +++SV L   S   + V E + +     +  T+  ++ G         
Sbjct: 143 ASAAKRPLTRRGIARSVSLFTSS---TGVDEPDEVR--MPNGDTLVQYMGGREATATAQR 197

Query: 177 LL-LHYPPATPVTLVYRATWPEQRIYQGQL 205
           LL L + P TPV +V   + P+Q IY  QL
Sbjct: 198 LLALGHAPDTPVVVVENCSRPDQHIYHLQL 227


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 758,728
Number of extensions: 29566
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)