BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0060.p
         (525 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311966|ref|YP_003776058.1| precorrin-8X methylmutase [Herb...  1054   0.0  

>gi|300311966|ref|YP_003776058.1| precorrin-8X methylmutase
           [Herbaspirillum seropedicae SmR1]
          Length = 525

 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/525 (99%), Positives = 523/525 (99%)

Query: 1   MSRQGQSAVVIAGHGSRDPDSLREFEALVDLVRERAAGRLVRHGYLEFAAPTIAEAAAAC 60
           MSRQGQSAVVIAGHGSRDPDSLREFEALVDLVRERAAGR+VRHGYLEFAAPTIAEAAAAC
Sbjct: 1   MSRQGQSAVVIAGHGSRDPDSLREFEALVDLVRERAAGRIVRHGYLEFAAPTIAEAAAAC 60

Query: 61  VTDGATEVAVVPGVLLGARHAKNDMPAELLALARDYPQVDFHFGAPMDLHPLLLQLVQQR 120
           V DGATEVAVVPGVLLGARHAKNDMPAELLALARDYPQVDFHFGAPMDLHPLLLQLVQQR
Sbjct: 61  VADGATEVAVVPGVLLGARHAKNDMPAELLALARDYPQVDFHFGAPMDLHPLLLQLVQQR 120

Query: 121 IVEAEAQSQDLIARRDSCLVLVGRGTTDPDANGEIAKLARMVQEGMGFGGIKVCFSGTAT 180
           +VEAEAQSQDLIARRDSCLVLVGRGTTDPDANGEIAKLARMVQEGMGFGGIKVCFSGTAT
Sbjct: 121 VVEAEAQSQDLIARRDSCLVLVGRGTTDPDANGEIAKLARMVQEGMGFGGIKVCFSGTAT 180

Query: 181 PLVRDGLAQAAAEGWQRLVVLPFFLFDGVLVKRIYAAADELAQREPGVEVLKAAYLGVHA 240
           PLVRDGLAQAA EGWQRLVVLPFFLFDGVLVKRIYAAADELAQREPGVEVLKAAYLGVHA
Sbjct: 181 PLVRDGLAQAAPEGWQRLVVLPFFLFDGVLVKRIYAAADELAQREPGVEVLKAAYLGVHA 240

Query: 241 HVADVMLERAREAAEGRAAMNCTLCKYRVQIVGFEQQVGEPQRAHHLQVRDLAAREQSAP 300
           HVADVMLERAREAAEGRAAMNCTLCKYRVQIVGFEQQVGEPQRAHHLQVRDLAAREQSAP
Sbjct: 241 HVADVMLERAREAAEGRAAMNCTLCKYRVQIVGFEQQVGEPQRAHHLQVRDLAAREQSAP 300

Query: 301 AILGTAPYVPHPIEAESMEIIQAGRDWSGFPPEHLTVLQRLVHTSGDFAVADEIYFSAGA 360
           AILGTAPYVPHPIEAESMEIIQAGRDWSGFPPEHLTVLQRLVHTSGDFAVADEIYFSAGA
Sbjct: 301 AILGTAPYVPHPIEAESMEIIQAGRDWSGFPPEHLTVLQRLVHTSGDFAVADEIYFSAGA 360

Query: 361 AQAGMKALLRCKRVVTDVTMVQTGLKRAVLEQLGVETWCGVHDPESHLMAQNLGMTRSAA 420
           AQAGMKALLRCKRVVTDVTMVQTGLKRAVLEQLGVETWCGVHDPESHLMAQNLGMTRSAA
Sbjct: 361 AQAGMKALLRCKRVVTDVTMVQTGLKRAVLEQLGVETWCGVHDPESHLMAQNLGMTRSAA 420

Query: 421 GIRRAWQKFGNDIVLAIGDAPTAITEAVRLIREHGWRPQLVIGLPVGFVGTRESKDELRR 480
           GIRRAWQKFGNDIVLAIGDAPTAITEAVRLIREHGWRPQLVIGLPVGFVGTRESKDELRR
Sbjct: 421 GIRRAWQKFGNDIVLAIGDAPTAITEAVRLIREHGWRPQLVIGLPVGFVGTRESKDELRR 480

Query: 481 CLQVPRITNSGTRGGSPWAASVVNALMIDAIAWLVAQEAQTEGAQ 525
           CLQVPRITNSGTRGGSPWAASVVNALMIDAIAWLVAQEAQTEGAQ
Sbjct: 481 CLQVPRITNSGTRGGSPWAASVVNALMIDAIAWLVAQEAQTEGAQ 525


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,682,593
Number of extensions: 71767
Number of successful extensions: 257
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 435
Effective length of database: 1,193,720
Effective search space: 519268200
Effective search space used: 519268200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)