BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0056.p
         (1096 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311969|ref|YP_003776061.1| cobalamin biosynthesis protein ...  1624   0.0  

>gi|300311969|ref|YP_003776061.1| cobalamin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1397

 Score = 1624 bits (4206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 866/890 (97%), Positives = 868/890 (97%), Gaps = 6/890 (0%)

Query: 1   MSEPLARIALLTHAPTDLAMLATARAQLPADFPAVAGYDLQRLQAADQDQASQWPSLAAL 60
           MSEPLARIALLTHAPTDLAMLATARAQLPADFPAVAGYDLQRLQAADQDQASQWPSLAAL
Sbjct: 10  MSEPLARIALLTHAPTDLAMLATARAQLPADFPAVAGYDLQRLQAADQDQASQWPSLAAL 69

Query: 61  LRGELAAAQVIVLRVLGRLGAVQGFPEMLRVVRAEGRQLIVLSGTGEPDPELAAASTAPA 120
           LRGELAAAQVIVLRVLGRLGAVQGFPEMLRVVRAEGRQLIVLSGTGEPDPELAAASTAPA
Sbjct: 70  LRGELAAAQVIVLRVLGRLGAVQGFPEMLRVVRAEGRQLIVLSGTGEPDPELAAASTAPA 129

Query: 121 DVQQQALAYFNGGGSVNLAQMLRCLSDRLLLSGYGYEPAQALPEHGLYHPDLEQDAGIAD 180
           DVQQQALAYFNGGGSVNLAQMLRCLSDR+LLSGYGYEPAQALPEHGLYHPDLEQDAGIAD
Sbjct: 130 DVQQQALAYFNGGGSVNLAQMLRCLSDRMLLSGYGYEPAQALPEHGLYHPDLEQDAGIAD 189

Query: 181 WLALRAQAPAGKPAVGIIFYRAHWLSGNTAFIDALVAALEARGLDVLPVFTSSLRVSAGG 240
           WLALRAQAPAGKPAVGIIFYRAHWLSGNTAFIDALVAALEARGLDVLPVFTSSLRVSAGG
Sbjct: 190 WLALRAQAPAGKPAVGIIFYRAHWLSGNTAFIDALVAALEARGLDVLPVFTSSLRVSAGG 249

Query: 241 GQALPPALQYFGAGQVDLIINTTSFAMGEITAGGVTPAGWSVSVLEQLDLPVLQAITSGM 300
           GQALPPALQYFGAGQVDLIINTTSFAMGEITAGGVTPAGWSVSVLEQLDLPVLQAITSGM
Sbjct: 250 GQALPPALQYFGAGQVDLIINTTSFAMGEITAGGVTPAGWSVSVLEQLDLPVLQAITSGM 309

Query: 301 TQAQWQHSTRGMNPLDAAMNVVLPEFDGRIIGVPLSFKETTDSGAVQYQPLPDRVRRIAG 360
           TQAQWQHSTRGMNPLDAAMNVVLPEFDGRIIGVPLSFKETTDSGAVQYQPLPDRVRRIAG
Sbjct: 310 TQAQWQHSTRGMNPLDAAMNVVLPEFDGRIIGVPLSFKETTDSGAVQYQPLPDRVRRIAG 369

Query: 361 LAQRLVRLRSTPNANKRIAFIFTNSSSKASQIGNAVGLDAPESLMAVLRALSADGYAIDA 420
           LAQRLVRLRSTPNANKRIAFIFTNSSSKASQIGNAVGLDAPESLMAVLRALSADGYAIDA
Sbjct: 370 LAQRLVRLRSTPNANKRIAFIFTNSSSKASQIGNAVGLDAPESLMAVLRALSADGYAIDA 429

Query: 421 LPQTGTALIHELVDRCSYDDILLTEDQLRRAAARIPAARYAQWFAALPTSLQDKMQRQWG 480
           LPQTGTALIHELVDRCSYDDILLTEDQLRRAAARIPAARYAQWFAALPTSLQ+KMQRQWG
Sbjct: 430 LPQTGTALIHELVDRCSYDDILLTEDQLRRAAARIPAARYAQWFAALPTSLQEKMQRQWG 489

Query: 481 AAPGQAYVHDQHLVIAGLDLGNAFVALQPPRGYGMDPDAIYHQPDLPPTHHYYALYRWLD 540
           AAPGQAYVHDQHLVIAGLDLGNAFVALQPPRGYGMDPDAIYHQPDLPPTHHYYALYRWLD
Sbjct: 490 AAPGQAYVHDQHLVIAGLDLGNAFVALQPPRGYGMDPDAIYHQPDLPPTHHYYALYRWLD 549

Query: 541 EEWGAHAIVHVGKHGTLEWLPGKGVGLSDECFPDALLGDMPLFYPFIINDPGEGSQAKRR 600
           EEWGAHAIVHVGKHGTLEWLPGKGVGLSDECFPDALLGDMPLFYPFIINDPGEGSQAKRR
Sbjct: 550 EEWGAHAIVHVGKHGTLEWLPGKGVGLSDECFPDALLGDMPLFYPFIINDPGEGSQAKRR 609

Query: 601 AHAVVVDHLTPPMTTADSYGALAQLTQLVDEYYQVEVLDPSKLPLLQQQIWELVRQTNLD 660
           AHAVVVDHLTPPMTTADSYGALAQLTQLVDEYYQVEVLDPSKLPLLQQQIWELVRQTNLD
Sbjct: 610 AHAVVVDHLTPPMTTADSYGALAQLTQLVDEYYQVEVLDPSKLPLLQQQIWELVRQTNLD 669

Query: 661 TDLQYKLL------HHDHDHDHDHGHDHDHHHHHHGHAHHHHDHGDHAHHDHDHAHEEGE 714
           TDLQYKLL       HDHDHDH H HDH HHHH H H HH H    H  HDHDHAHEEGE
Sbjct: 670 TDLQYKLLHHDHDHDHDHDHDHGHDHDHHHHHHGHAHHHHDHGDHAHHDHDHDHAHEEGE 729

Query: 715 LPHALTELDGAGVAHLIEDLDGYLCELGAAQIRDGLHILGRTPDQAQMPDMLVALTRLPN 774
           LPHALTELDGAGVAHLIEDLDGYLCELGAAQIRDGLHILGRTPDQAQMPDMLVALTRLPN
Sbjct: 730 LPHALTELDGAGVAHLIEDLDGYLCELGAAQIRDGLHILGRTPDQAQMPDMLVALTRLPN 789

Query: 775 QDLPGLQEEVARLFGLSLDMLLEHKGRRLNIDDALARCADRPIVTRADALEAIDALCLRL 834
           QDLPGLQEEVARLFGLSLDMLLEHKGRRLNIDDALARCADRPI TRADALEAIDALCLRL
Sbjct: 790 QDLPGLQEEVARLFGLSLDMLLEHKGRRLNIDDALARCADRPIATRADALEAIDALCLRL 849

Query: 835 MQALQEHDFAPTAIDGVLGSVFAALEQASPEQRPRLQPAMSQAATSVLGG 884
           MQALQEHDFAPTAID VLGSVFAALEQASPEQRPRLQPAMSQAATSVLGG
Sbjct: 850 MQALQEHDFAPTAIDRVLGSVFAALEQASPEQRPRLQPAMSQAATSVLGG 899


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 3,315,198
Number of extensions: 144343
Number of successful extensions: 531
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 1
Length of query: 1096
Length of database: 1,619,870
Length adjustment: 95
Effective length of query: 1001
Effective length of database: 1,170,045
Effective search space: 1171215045
Effective search space used: 1171215045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 136 (57.0 bits)