BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0049.p (545 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311974|ref|YP_003776066.1| methyl-accepting chemotaxis I p... 1010 0.0 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 348 8e-97 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 327 2e-90 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 317 2e-87 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 308 1e-84 >gi|300311974|ref|YP_003776066.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 1010 bits (2612), Expect = 0.0, Method: Compositional matrix adjust. Identities = 517/517 (100%), Positives = 517/517 (100%) Query: 1 MSLLNRLTVGRRLALGFVVIIGLMLAMLLAMLAQLKQVEQANQILQKEQAERLSLAKEWR 60 MSLLNRLTVGRRLALGFVVIIGLMLAMLLAMLAQLKQVEQANQILQKEQAERLSLAKEWR Sbjct: 1 MSLLNRLTVGRRLALGFVVIIGLMLAMLLAMLAQLKQVEQANQILQKEQAERLSLAKEWR 60 Query: 61 ENIVVNVARALALGVTANETLLKFFADDMAGLVTRTTVIQKRYAELDDTEEGKTILERMA 120 ENIVVNVARALALGVTANETLLKFFADDMAGLVTRTTVIQKRYAELDDTEEGKTILERMA Sbjct: 61 ENIVVNVARALALGVTANETLLKFFADDMAGLVTRTTVIQKRYAELDDTEEGKTILERMA 120 Query: 121 KERKRYLVVRQQMEEVGADAATRQQLVQDMKSISAAYIKEGTSLVQYQERRTAELGGQID 180 KERKRYLVVRQQMEEVGADAATRQQLVQDMKSISAAYIKEGTSLVQYQERRTAELGGQID Sbjct: 121 KERKRYLVVRQQMEEVGADAATRQQLVQDMKSISAAYIKEGTSLVQYQERRTAELGGQID 180 Query: 181 AAIDRSRFVLMGATAASILLAVLLGWLLTQSIAAPLHEMQALTLQIAAGDLTSTVPAATG 240 AAIDRSRFVLMGATAASILLAVLLGWLLTQSIAAPLHEMQALTLQIAAGDLTSTVPAATG Sbjct: 181 AAIDRSRFVLMGATAASILLAVLLGWLLTQSIAAPLHEMQALTLQIAAGDLTSTVPAATG 240 Query: 241 RSELASLLKNVGSMQESLRSLVSKSRQAALSVNQASSEAAAGNADLSARTEQAASSLEQT 300 RSELASLLKNVGSMQESLRSLVSKSRQAALSVNQASSEAAAGNADLSARTEQAASSLEQT Sbjct: 241 RSELASLLKNVGSMQESLRSLVSKSRQAALSVNQASSEAAAGNADLSARTEQAASSLEQT 300 Query: 301 ASAMEEIAATAQQSAEFARSANAQVAQASGVAQHGGQVMGDVVQTMGRIDESSRRIADII 360 ASAMEEIAATAQQSAEFARSANAQVAQASGVAQHGGQVMGDVVQTMGRIDESSRRIADII Sbjct: 301 ASAMEEIAATAQQSAEFARSANAQVAQASGVAQHGGQVMGDVVQTMGRIDESSRRIADII 360 Query: 361 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKELINASL 420 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKELINASL Sbjct: 361 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKELINASL 420 Query: 421 AAVDGGMSLVGDAGKIIQDVVQNVELVRGTISEISVAAEEQSRGIAEVNIAISNMEQTTQ 480 AAVDGGMSLVGDAGKIIQDVVQNVELVRGTISEISVAAEEQSRGIAEVNIAISNMEQTTQ Sbjct: 421 AAVDGGMSLVGDAGKIIQDVVQNVELVRGTISEISVAAEEQSRGIAEVNIAISNMEQTTQ 480 Query: 481 QNASLVEQTTAATMQLNQQAVLLAEVISGFKLPAQYQ 517 QNASLVEQTTAATMQLNQQAVLLAEVISGFKLPAQYQ Sbjct: 481 QNASLVEQTTAATMQLNQQAVLLAEVISGFKLPAQYQ 517 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 348 bits (892), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 227/541 (41%), Positives = 325/541 (60%), Gaps = 17/541 (3%) Query: 1 MSLLNRLTVGRRLALGFVVIIGLMLAMLLAMLAQLKQVEQANQILQKEQAERLSLAKEWR 60 M+++ + +GRRL LGF +I+ + + L +L V QA + + E + L +W Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 61 ENIVVNVARALALGVTANETLLKFFADDMAGLVTRTTVIQKRYAELDDTEEGKTILERMA 120 N+V + R +A+ +++ L +FA ++A + QK+ L T E K + +++ Sbjct: 61 TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120 Query: 121 KERKRYLVVRQQMEEVGADAATRQQ---LVQDMKSISAAYIKEGTSLVQYQERRTAELGG 177 + RK YL R ++ + A T + L Q + AY LV +Q + + Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAR 180 Query: 178 QIDAAIDRSRFVLMGATAASILLAVLLGWLLTQSIAAPLHEMQALTLQIAAGDLTSTVPA 237 +IDA +SR +++ +LL ++ LT I PLH ++ +A GDL+S + A Sbjct: 181 EIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEI-A 239 Query: 238 ATGRSELASLLKNVGSMQESLRSLVSKSRQAALSVNQASSEAAAGNADLSARTEQAASSL 297 T R E LL+++ M +SLR +VS R +++ ASSE AAGN DLS+RTEQ ASSL Sbjct: 240 VTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSL 299 Query: 298 EQTASAMEEIAATAQQSAEFARSANAQVAQASGVAQHGGQVMGDVVQTMGRIDESSRRIA 357 +TASAMEE+ +T +Q+A+ AR A+ AS VA+ GG V+ VV TMG I+ SSR+I Sbjct: 300 AETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIV 359 Query: 358 DIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKELIN 417 DII VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AA+EIKELIN Sbjct: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIN 419 Query: 418 ASLAAVDGGMSLVGDAGKIIQDVVQNVELVRGTISEISVAAEEQSRGIAEVNIAISNMEQ 477 S+ VD G LV AG +Q+VV +V V ++EIS A+ EQ+ GI ++N+AI+ M+Q Sbjct: 420 DSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQ 479 Query: 478 TTQQNASLVEQTTAATMQLNQQAVLLAEVISGFKLPAQYQ*SSHPAIRQ--------PAI 529 TQQNA+LVE+ AA + QA L +++S F+L + P +R+ P + Sbjct: 480 VTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSER-----EPLVRREIDVTPSSPVL 534 Query: 530 P 530 P Sbjct: 535 P 535 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 327 bits (837), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 220/523 (42%), Positives = 310/523 (59%), Gaps = 16/523 (3%) Query: 4 LNRLTVGRRLALGFVVIIGLMLAMLLAMLAQLKQVEQANQILQKEQAERLSLAKE----- 58 + L +G RLA+GF+ ++ LM M+ + +L + A + R++L KE Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDAT-----DDMTRIALKKERDAVQ 55 Query: 59 WRENIVVNVARALALGVTANETLLKFFADDMAGLVTRTTVIQKRY-AELDDTEEGKTILE 117 W I N R A+ + ++ +F + R + +QK A + D EE K + + Sbjct: 56 WHAAIKENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEE-KRLFD 114 Query: 118 RMAKERKRYLVVRQQMEEV---GADAATRQQLVQDMKSISAAYIKEGTSLVQYQERRTAE 174 + K R Y RQ + +V G DA R+ + + Y +Q++ + Sbjct: 115 EVGKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQ 174 Query: 175 LGGQIDAAIDRSRFVLMGATAASILLAVLLGWLLTQSIAAPLHEMQALTLQIAAGDLTST 234 I+ R +L+ A I+L L WLLT+SI PL++ + +AAGDLTS Sbjct: 175 TAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSR 234 Query: 235 VPAATGRSELASLLKNVGSMQESLRSLVSKSRQAALSVNQASSEAAAGNADLSARTEQAA 294 + +++ R E LL + +M +L +V + R ++N AS E A GN DLSARTE A Sbjct: 235 IDSSS-RDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQA 293 Query: 295 SSLEQTASAMEEIAATAQQSAEFARSANAQVAQASGVAQHGGQVMGDVVQTMGRIDESSR 354 SLE+TASAME++ +T +Q+A+ AR AN A AS VA GG V+ VV TMG I SS+ Sbjct: 294 GSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQ 353 Query: 355 RIADIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKE 414 +IADIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA+EIK+ Sbjct: 354 KIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQ 413 Query: 415 LINASLAAVDGGMSLVGDAGKIIQDVVQNVELVRGTISEISVAAEEQSRGIAEVNIAISN 474 LI+ S+ VD G LV AG +Q+VVQ+V V + EI++A++EQS GI +VN+AI++ Sbjct: 414 LIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITH 473 Query: 475 MEQTTQQNASLVEQTTAATMQLNQQAVLLAEVISGFKLPAQYQ 517 +++TTQQNA+LVEQ AA + QA L + +S F+L Q Sbjct: 474 IDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRLEDDAQ 516 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 317 bits (812), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 223/519 (42%), Positives = 312/519 (60%), Gaps = 12/519 (2%) Query: 1 MSLLNRLTVGRRLALGFVVIIGLMLAMLLAMLAQLKQVEQANQILQKEQAERLSLAKEWR 60 M L + ++LAL F V+I L L L + +LKQV +A+ + + + A+E + Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 ENIVVNVARALAL--GVTANETLL--KFFADDMAGLVTRTTVIQKRYAELDDTEEGKTIL 116 ++ L L VT E K D + L + + ++R +E + E+ L Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 117 ERMAKERKRYLVVRQQMEEVGAD---AATRQQLVQDMKSISAAYIKEGTSLVQYQERRTA 173 + + Y+ V +Q+ E+ A+ TR D + + + ++V+ +A Sbjct: 121 KNLTA----YVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSA 176 Query: 174 ELGGQIDAAIDRSRFVLMGATAASILLAVLLGWLLTQSIAAPLHEMQALTLQIAAGDLTS 233 + + ++ ++G AA++L+A LL +L+ +++ PL E + ++A GDLT Sbjct: 177 QADEEASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTL 236 Query: 234 TVPAATGRSELASLLKNVGSMQESLRSLVSKSRQAALSVNQASSEAAAGNADLSARTEQA 293 + A GR E +L++ + +M ESLR +VS+ RQ ++ AS E A GN DLS RTEQ Sbjct: 237 RIRPA-GRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQ 295 Query: 294 ASSLEQTASAMEEIAATAQQSAEFARSANAQVAQASGVAQHGGQVMGDVVQTMGRIDESS 353 A SLE+TASAMEE+ +T Q+A+ AR AN A AS +A GG+V+G VVQTM I ESS Sbjct: 296 AGSLEETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESS 355 Query: 354 RRIADIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIK 413 RRIADII VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA+EIK Sbjct: 356 RRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIK 415 Query: 414 ELINASLAAVDGGMSLVGDAGKIIQDVVQNVELVRGTISEISVAAEEQSRGIAEVNIAIS 473 ELI+ S+ V G +LV AG + +VV +V V ++EIS A +EQS GI EVN+AI+ Sbjct: 416 ELIDDSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAIT 475 Query: 474 NMEQTTQQNASLVEQTTAATMQLNQQAVLLAEVISGFKL 512 M++TTQQNA+LVEQ AA L QA LA V+ FKL Sbjct: 476 QMDETTQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 308 bits (788), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 220/527 (41%), Positives = 321/527 (60%), Gaps = 28/527 (5%) Query: 4 LNRLTVGRRLALGFVVIIGLMLAMLLAMLAQLKQVEQANQILQKEQAERLSLAKEWRENI 63 L + + RLA+ F V+IG+M + + L + +++ ++ +++ E+++LA E R+N+ Sbjct: 3 LKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNV 62 Query: 64 ---VVNVARALALGVTANETLLKFFADDMAGLVTRTTVIQKRYAELDDTEEGKTILERMA 120 N+ AL LG E + D A +TT + ++ T G+ + + + Sbjct: 63 NGAARNLRNAL-LGRNLEEA--TRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQ 119 Query: 121 KERKRYLVVRQQMEEVGADAATRQQ--------LVQDMKSISAAYIKEGTSLVQYQ---- 168 + R Y R ++ E+ +QQ L + Y + V +Q Sbjct: 120 EARSAYNTPRDKLREL-----IKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLM 174 Query: 169 ERRTAELGGQIDAAIDRSRFVLMGATAASILLAVLLGWLLTQSIAAPLHEMQALTLQIAA 228 E+ E +AI +++G +A +I L V+ WL+T+SI PL+E ++ +AA Sbjct: 175 EQSVTEGRDTTQSAI----AMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAA 230 Query: 229 GDLTSTVPAATGRSELASLLKNVGSMQESLRSLVSKSRQAALSVNQASSEAAAGNADLSA 288 GDLT + AT + E +LL + SM +SL +VS+ RQ + ++N AS+E A GN DLS+ Sbjct: 231 GDLTVQI-GATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSS 289 Query: 289 RTEQAASSLEQTASAMEEIAATAQQSAEFARSANAQVAQASGVAQHGGQVMGDVVQTMGR 348 RTE+ A +LE+TASAMEE+ +T +Q+A+ AR AN+ A AS VA GG V+G VVQTMG Sbjct: 290 RTEEQAGALEETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGE 349 Query: 349 IDESSRRIADIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATA 408 I+++SR+I DII VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+A Sbjct: 350 INDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASA 409 Query: 409 AREIKELINASLAAVDGGMSLVGDAGKIIQDVVQNVELVRGTISEISVAAEEQSRGIAEV 468 A+EIK LI+ S++ VD G LV AG + +VV +V V ++EIS A+ EQS GI ++ Sbjct: 410 AKEIKALIDDSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQI 469 Query: 469 NIAISNMEQTTQQNASLVEQTTAATMQLNQQAVLLAEVISGFKLPAQ 515 N AI+ M+Q TQQNA+LVE+ AA L +Q+ L+ +S FKL + Sbjct: 470 NHAITQMDQVTQQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLSSH 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.126 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,274,310 Number of extensions: 44171 Number of successful extensions: 783 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 423 Number of HSP's successfully gapped: 71 Length of query: 545 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 455 Effective length of database: 1,193,720 Effective search space: 543142600 Effective search space used: 543142600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)