BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0044.p
         (335 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate uridyly...   624   e-180
gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate uridyly...   462   e-131

>gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  624 bits (1608), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 307/307 (100%), Positives = 307/307 (100%)

Query: 29  MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 88
           MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE
Sbjct: 1   MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 60

Query: 89  TIRHVVPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDVDAGQKNVMAQ 148
           TIRHVVPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDVDAGQKNVMAQ
Sbjct: 61  TIRHVVPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDVDAGQKNVMAQ 120

Query: 149 MTAMFEREGKSLLAVQDVPRPETRQYGIVSGSAYADRLELMSGIVEKPAPEEAPSTLAVV 208
           MTAMFEREGKSLLAVQDVPRPETRQYGIVSGSAYADRLELMSGIVEKPAPEEAPSTLAVV
Sbjct: 121 MTAMFEREGKSLLAVQDVPRPETRQYGIVSGSAYADRLELMSGIVEKPAPEEAPSTLAVV 180

Query: 209 GRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKA 268
           GRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKA
Sbjct: 181 GRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKA 240

Query: 269 AVAMGFKHKEVGSGFAQFLQDFAAQHDLQQAAQPKGPATVTPLKPNAAPAHGGAGQEKQP 328
           AVAMGFKHKEVGSGFAQFLQDFAAQHDLQQAAQPKGPATVTPLKPNAAPAHGGAGQEKQP
Sbjct: 241 AVAMGFKHKEVGSGFAQFLQDFAAQHDLQQAAQPKGPATVTPLKPNAAPAHGGAGQEKQP 300

Query: 329 VAANSVM 335
           VAANSVM
Sbjct: 301 VAANSVM 307


>gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  462 bits (1189), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/294 (75%), Positives = 256/294 (87%)

Query: 1   MKKITKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIQYAVEEAVEAGITEMIFITGRN 60
           +KKI KAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLI YAVEEAV AGITEM+FITGRN
Sbjct: 3   IKKIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGRN 62

Query: 61  KRAIEDHFDKAYELESELEAAGKVKLLETIRHVVPKHINCVYVRQAEPLGLGHAVLLAKP 120
           KRAIEDHFDKAYELESELEAAGK KLLE +++VVPK +NC+++RQ+ PLGLGHAVL A+P
Sbjct: 63  KRAIEDHFDKAYELESELEAAGKKKLLEIVQNVVPKSVNCIFIRQSVPLGLGHAVLCARP 122

Query: 121 LVGDEPFAVLLADDFMDVDAGQKNVMAQMTAMFEREGKSLLAVQDVPRPETRQYGIVSGS 180
           +VG+EPFAVLLADDFMD DAG K V+AQMT ++EREG S+LAVQ+VP+ +T+QYGIVS +
Sbjct: 123 VVGEEPFAVLLADDFMDTDAGVKPVLAQMTEIYEREGMSMLAVQEVPQSDTKQYGIVSAT 182

Query: 181 AYADRLELMSGIVEKPAPEEAPSTLAVVGRYVLTPAIFERLENIGTGAGGEIQLTDAISA 240
            Y   LE ++ IVEKPAPEEAPSTLAVVGRYVL   IF+ LENIG GAGGEIQLTD I+ 
Sbjct: 183 PYQPNLERVNAIVEKPAPEEAPSTLAVVGRYVLNNRIFDYLENIGRGAGGEIQLTDGIAK 242

Query: 241 LLQQEQILAYRYEGQRFDCGSKLGYLKAAVAMGFKHKEVGSGFAQFLQDFAAQH 294
           L+Q E +LAYRY+GQR+DCGSKLGYLKA VAMG KH E G+ F++FL+D A + 
Sbjct: 243 LMQAESVLAYRYQGQRYDCGSKLGYLKATVAMGMKHPETGAAFSEFLKDVAGKQ 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,108,175
Number of extensions: 49451
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,212,660
Effective search space: 301952340
Effective search space used: 301952340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)