BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0039.p (537 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311983|ref|YP_003776075.1| methyl-accepting chemotaxis II ... 1054 0.0 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 479 e-136 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 431 e-122 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 429 e-121 gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I p... 424 e-119 >gi|300311983|ref|YP_003776075.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 537 Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/537 (99%), Positives = 535/537 (99%) Query: 1 VKKFRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVK 60 +KKFRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVK Sbjct: 1 MKKFRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVK 60 Query: 61 LLLARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRSQISEPEEKALYPQA 120 LLLARLRSNESQLILYAADPGLTKTLQARTDDVLKDL+AALDTYRSQISEPEEKALYPQA Sbjct: 61 LLLARLRSNESQLILYAADPGLTKTLQARTDDVLKDLEAALDTYRSQISEPEEKALYPQA 120 Query: 121 SQRLEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSA 180 SQRLEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSA Sbjct: 121 SQRLEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSA 180 Query: 181 ADTARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLSTEIG 240 ADTARIYRESLMWGVASLAISTFIGVALAV IARIISSPLSLAARIADTVAAGNLSTEIG Sbjct: 181 ADTARIYRESLMWGVASLAISTFIGVALAVIIARIISSPLSLAARIADTVAAGNLSTEIG 240 Query: 241 AAGSDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSL 300 AAGSDETGQVI ALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSL Sbjct: 241 AAGSDETGQVIGALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSL 300 Query: 301 QQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSASGRIV 360 QQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTM+DVVDTMSSISSASGRIV Sbjct: 301 QQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMQDVVDTMSSISSASGRIV 360 Query: 361 EIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLID 420 EIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLID Sbjct: 361 EIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLID 420 Query: 421 NTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDS 480 NTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDS Sbjct: 421 NTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDS 480 Query: 481 VTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRLPTSSAALARAGGARSASNARQA 537 VTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRLPTSSAALARAGGARSASNARQA Sbjct: 481 VTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRLPTSSAALARAGGARSASNARQA 537 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 479 bits (1233), Expect = e-136, Method: Compositional matrix adjust. Identities = 269/513 (52%), Positives = 364/513 (70%) Query: 4 FRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVKLLL 63 F + RI+ KL ++F +L+L G FS+ QL VNQ+A ELATNWLPSI++L D+K+ L Sbjct: 4 FYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMKVAL 63 Query: 64 ARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRSQISEPEEKALYPQASQR 123 +R+R+N++QL LY D + + + L+ L A Y QISEP EKAL+P + R Sbjct: 64 SRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGVNAR 123 Query: 124 LEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSAADT 183 +++ + HG + A+ + AK + G + + Y SLL D LA VN G QS Sbjct: 124 IDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQSTRSA 183 Query: 184 ARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLSTEIGAAG 243 Y ++ +W VA L + G+ALA+ IAR+I++PL A A +AAG+L+ +I A Sbjct: 184 ETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADITARS 243 Query: 244 SDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSLQQT 303 DETGQ+ AAL MN SL I+S V+S ++ IATAS QI++GNLDLSSRTEEQASSL++T Sbjct: 244 DDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSLEET 303 Query: 304 AAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSASGRIVEII 363 A+AME++T ++ + ++R+AN+LAL AS++A E G+ + V++TM SI ++S +IV+II Sbjct: 304 ASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIVDII 363 Query: 364 SVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLIDNTV 423 SVIDSIAFQTNILALNAAVEAARAG+ GRGFA+VA EVRSLAQRSATAAKEIK LIDN+V Sbjct: 364 SVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLIDNSV 423 Query: 424 DQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDSVTQ 483 QVG GS LVQKAG T+ VV+SV++VT ++++I+A S Q++ I ++N AI QMD VTQ Sbjct: 424 QQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVTQ 483 Query: 484 QNAALVEEAEAASQALQEQAMQLSSMVSRFRLP 516 QNAALVEEA +ASQ+L QA +LS +V FRLP Sbjct: 484 QNAALVEEAASASQSLSHQAQRLSELVGVFRLP 516 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 431 bits (1107), Expect = e-122, Method: Compositional matrix adjust. Identities = 262/546 (47%), Positives = 362/546 (66%), Gaps = 12/546 (2%) Query: 1 VKKFRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVK 60 +K F DLRISRKL +F +++ + G FS+ QL VN ++ E++TNWLPSI+TL ++ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 LLLARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRSQISEPEEKALYPQA 120 L ++RLRS E Q IL A D + ++ + +L A Y +QISEPEEKA+YP+ Sbjct: 61 LAMSRLRSFELQHIL-AKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEV 119 Query: 121 SQRLEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSA 180 + + + EH ++ Q A+ + G S+ Y + L+ LA VN +G D S Sbjct: 120 EKLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISN 179 Query: 181 ADTARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLSTEIG 240 IY ++ +W + ++A + + LAV ++R+I+ PL A +A VA G+L+T I Sbjct: 180 KQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIE 239 Query: 241 AAGSDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSL 300 AG DETGQ++ AL MN SL I+ V+ ++TI TAS +IA+GNLDLSSRTEEQASSL Sbjct: 240 PAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSL 299 Query: 301 QQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSASGRIV 360 ++TA+AME++T ++ + ++R+AN+LA+ AS VA + G + VVDTM SI+++S +I Sbjct: 300 EETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIA 359 Query: 361 EIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLID 420 +II VID IAFQTNILALNAAVEAARAG+ GRGFA+VA+EVRSLAQRSA AAKEIK LI+ Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIE 419 Query: 421 NTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDS 480 +V QV GS+LV++AG TM VV SV +VT IV +I++ S QS+ I ++N AIAQMD Sbjct: 420 GSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDE 479 Query: 481 VTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRL-----------PTSSAALARAGGAR 529 VTQQNAALVEEA AA+Q+LQEQA L+ V F+L P +A++AR R Sbjct: 480 VTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPPVRAASVARTAAVR 539 Query: 530 SASNAR 535 A R Sbjct: 540 HAPATR 545 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 429 bits (1103), Expect = e-121, Method: Compositional matrix adjust. Identities = 254/519 (48%), Positives = 357/519 (68%), Gaps = 15/519 (2%) Query: 4 FRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVKLLL 63 F +L+I++KL +SF ++VL + G F++ +L VNQ++ ++ATNWLP+IK ++ L Sbjct: 4 FNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQASL 63 Query: 64 ARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDT-------YRSQISEPEEKAL 116 R+R +E Q++ AA P A +D LK + + LD Y +QISE EEK L Sbjct: 64 PRMRISELQMV-TAATP-------AEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVL 115 Query: 117 YPQASQRLEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGG 176 Y + S+ L+ L A+ A+A+F G S+ + S++++ + VN G Sbjct: 116 YEKFSKSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGS 175 Query: 177 DQSAADTARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLS 236 +S ++YR + +W + LA I + LAV +AR +S PL+ A +A+ VA G+L+ Sbjct: 176 KRSDDMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLT 235 Query: 237 TEIGAAGSDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQ 296 +I A +DETG ++ +L MN SL I+ V++ ++TI TASQ+IATGNLDLSSRTEEQ Sbjct: 236 MDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQ 295 Query: 297 ASSLQQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSAS 356 A SL++TA+AME++T ++ + ++R+AN+LA AS +A + G + VV TM I+ +S Sbjct: 296 AGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESS 355 Query: 357 GRIVEIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIK 416 RI +IISVID IAFQTNILALNAAVEAARAG+ GRGFA+VA+EVRSLAQRSA+AAKEIK Sbjct: 356 NRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK 415 Query: 417 NLIDNTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIA 476 LID++V++VGAGSQLV++AG TM VVASV +VT +VA+I+A S+ QS I EIN AI Sbjct: 416 QLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAIT 475 Query: 477 QMDSVTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRL 515 QMD VTQQNAALVEEA AA+Q+LQ+QA +LS +VS F+L Sbjct: 476 QMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust. Identities = 249/512 (48%), Positives = 358/512 (69%) Query: 4 FRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVKLLL 63 F++L+I+RKL ++F +LVL + G FS+ QL+ V +++E++T+W+P+ K LGD+KL Sbjct: 4 FKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLKLYF 63 Query: 64 ARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRSQISEPEEKALYPQASQR 123 RLR ESQL +Y D L +R+ +L LD + Y + + E+ LY + + + Sbjct: 64 VRLRGTESQLAIYDGDVEAMNGLVSRSQAILTGLDKTMKDYEASLDNVPERELYTKVAGQ 123 Query: 124 LEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSAADT 183 + + L EH ++ A +D + +F G S+ LY +L D L +N+ GG+ + AD Sbjct: 124 IGEFLAEHKKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGGNAATADA 183 Query: 184 ARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLSTEIGAAG 243 + +S + + LA + IG+ LA+ +ARII+ PL A IA VA G+L +I Sbjct: 184 DDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQIQVQS 243 Query: 244 SDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSLQQT 303 DETGQ++ AL MN+ L ++ V+S +++IATAS +IATGNLDLS RTE+QA++L++T Sbjct: 244 KDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQATALEET 303 Query: 304 AAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSASGRIVEII 363 A+A+E++T ++ + T ++R+AN+LA+ AS VA G + VV+TM +I+ AS RIVEII Sbjct: 304 ASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAINEASNRIVEII 363 Query: 364 SVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLIDNTV 423 SVID IAFQTNILALNAAVEAARAG+ GRGFA+VA+EVRSLAQRSA+AAKEIK LID++V Sbjct: 364 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSV 423 Query: 424 DQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDSVTQ 483 +VGAG+ LV++AG TM VV SV++VT +V++I+A S QS I EIN A+ QMD VTQ Sbjct: 424 SKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVTQMDEVTQ 483 Query: 484 QNAALVEEAEAASQALQEQAMQLSSMVSRFRL 515 QNAALVEEA AA+Q++QEQA +L++ VS F+L Sbjct: 484 QNAALVEEAAAAAQSMQEQASRLAATVSVFKL 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.124 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,090,696 Number of extensions: 35865 Number of successful extensions: 451 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 258 Number of HSP's successfully gapped: 71 Length of query: 537 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 447 Effective length of database: 1,193,720 Effective search space: 533592840 Effective search space used: 533592840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)