BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0033.p
         (314 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311990|ref|YP_003776082.1| malonyl CoA-[acyl-carrier-prote...   598   e-172
gi|300311248|ref|YP_003775340.1| malonyl CoA-[acyl-carrier-prote...    73   3e-14

>gi|300311990|ref|YP_003776082.1| malonyl CoA-[acyl-carrier-protein]
           transacylase [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score =  598 bits (1541), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 309/314 (98%), Positives = 310/314 (98%)

Query: 1   MSMRLAILCPGQGAQHAGLFDLLREDEQAAAFLDQLPLTDYLDAPLAQVLSQPAHLYANG 60
           MSMRLAILCPGQGAQHAGLFDLLREDEQAAAFLDQLPLTDYLDAPLAQVLSQP HLYANG
Sbjct: 1   MSMRLAILCPGQGAQHAGLFDLLREDEQAAAFLDQLPLTDYLDAPLAQVLSQPTHLYANG 60

Query: 61  NAQVLIVAAQLAAWQALREPLAAIAGSPVAVAGYSVGELSAYAVAEVIDPVAAVALAAQR 120
           NAQVLIVAAQLAAWQALREPLAAIAG PVAVAGYSVGELSAYAVAEVIDPVAAVALAAQR
Sbjct: 61  NAQVLIVAAQLAAWQALREPLAAIAGPPVAVAGYSVGELSAYAVAEVIDPVAAVALAAQR 120

Query: 121 AAAMDAAARSRPGQGLMALGGIDLAAAQDCLLRHGAHVAIVTGDDTLIAGGSSPALEAVA 180
           AAAMDAAARSRPGQGLMALGGIDLAAAQDCLLRHGAHVAIVTGDDTLIAGGSSPALEAVA
Sbjct: 121 AAAMDAAARSRPGQGLMALGGIDLAAAQDCLLRHGAHVAIVTGDDTLIAGGSSPALEAVA 180

Query: 181 AELAGRGARTTVLPVGLASHTPLMQAAVTPFAAALEGLSLHAPKTALLAGVSGQGIADAH 240
           AELAGRGARTTVLPVGLASHTPLMQAAVTPFAAALEGLSLHAPKTALLAGVSGQGIADAH
Sbjct: 181 AELAGRGARTTVLPVGLASHTPLMQAAVTPFAAALEGLSLHAPKTALLAGVSGQGIADAH 240

Query: 241 QACALLLRQLTEPIQWAACMDACVERGVTVALELGPGASLSRMLRERHPHLSCRSLADFR 300
           QACALLLRQLTEPIQWAACMDACVERGVTVALELGPGA+LSRMLRERHPHLSCRSLADFR
Sbjct: 241 QACALLLRQLTEPIQWAACMDACVERGVTVALELGPGAALSRMLRERHPHLSCRSLADFR 300

Query: 301 SLPGLLSWLRRQTD 314
           SL GLLSWLRRQ D
Sbjct: 301 SLSGLLSWLRRQAD 314


>gi|300311248|ref|YP_003775340.1| malonyl CoA-[acyl-carrier-protein]
           transacylase [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 140/314 (44%), Gaps = 15/314 (4%)

Query: 5   LAILCPGQGAQHAGLFDLLREDEQAAAFLDQLPLTDYLDAPLAQVLSQ--PAHLYANGNA 62
            A + PGQG+Q  G+ +   +++     + +   +D L   L +++++     L    N 
Sbjct: 4   FAFVFPGQGSQAIGMLNGFADNDVVRQTVAEA--SDALQFDLGKLIAEGPKEDLDLTTNT 61

Query: 63  QVLIVAAQLAAWQALREPLAAIAGSPVAVAGYSVGELSAYAVAEVIDPVAAVALAAQRAA 122
           Q +++ A +A ++A    LAA   +P  VAG+S+GE SA   A VI    AV L   RA 
Sbjct: 62  QPVMLTAAVAFYRAW---LAAGGKAPALVAGHSLGEYSALVAAGVIAFKDAVPLVRFRAQ 118

Query: 123 AMDAAARSRPGQGLMA--LGGIDLAAAQDCL-LRHGAHVAIVTGDD--TLIAGGSSPALE 177
           AM  A     GQG MA  LG  D      C     G  V  V  +    ++  G   A+E
Sbjct: 119 AMQEAVPV--GQGGMAAILGLSDEDVRAACAEAAQGDVVEAVNFNAPAQVVIAGHKAAVE 176

Query: 178 AVAAELAGRGARTTV-LPVGLASHTPLMQAAVTPFAAALEGLSLHAPKTALLAGVSGQGI 236
                   +GA+  + LPV    H+ L++ A     A L  ++  AP+  L+  V    +
Sbjct: 177 RACDIAKAKGAKRALPLPVSAPFHSSLLKPASDRLQAYLANVAFSAPQIPLINNVDVAVV 236

Query: 237 ADAHQACALLLRQLTEPIQWAACMDACVERGVTVALELGPGASLSRMLRERHPHLSCRSL 296
            D       L+RQ   P++W   +      GVT  +E GPG  L+ + +  +  L   ++
Sbjct: 237 NDPAAIKDALVRQAAAPVRWVETVQKMAAEGVTHLVECGPGKVLTGLTKRINGDLVGEAI 296

Query: 297 ADFRSLPGLLSWLR 310
            D  SL  +L  L+
Sbjct: 297 VDQESLNKVLESLK 310


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,014,384
Number of extensions: 41786
Number of successful extensions: 233
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 2
Length of query: 314
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,217,395
Effective search space: 278783455
Effective search space used: 278783455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)