BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0032.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311991|ref|YP_003776083.1| triphosphoribosyl-dephospho-CoA...   496   e-141

>gi|300311991|ref|YP_003776083.1| triphosphoribosyl-dephospho-CoA
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  496 bits (1276), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 260/266 (97%), Positives = 261/266 (98%)

Query: 1   VLYPKPGLVSLIDNGSHDDMDASTFLRSLFSLRHYFFQIAVAGLKGAPFHHLQKLAIAAE 60
           VLYPKPGLVSLIDNGSHDDMDASTFLRSLFSLRHYFFQIAVAGLKGAPFHHLQKLAIAAE
Sbjct: 47  VLYPKPGLVSLIDNGSHDDMDASTFLRSLFSLRHYFFQIAVAGLKGAPFHHLQKLAIAAE 106

Query: 61  ARMLRATGGVNTHRGAIFALGMLCAAMAYCRGRRLPLQAEVIRATLLIQWGDALARHSGV 120
           ARMLRATGGVNTHRGAIFALGMLCAAMAYCRGR+LPLQAEVIRATLLIQWGDALARHSGV
Sbjct: 107 ARMLRATGGVNTHRGAIFALGMLCAAMAYCRGRKLPLQAEVIRATLLIQWGDALARHSGV 166

Query: 121 HLDRGAGQRSHGQSVALAHAVGGAREEGALGFPAVFEVALPQLQSTLAQGRAPHEARIDA 180
           HLD GAGQRSHGQSVALAHAVGGAREEGALGFPAVFEVALPQLQSTL QGRAPHEARIDA
Sbjct: 167 HLDHGAGQRSHGQSVALAHAVGGAREEGALGFPAVFEVALPQLQSTLEQGRAPHEARIDA 226

Query: 181 LFALMAHISDTNVYHRGGAEGAQRVRQQSAAFLVAGGTGASGWRAQALACHHDFVAHRLS 240
           LFALMAHISDTNVYHRGGAEGAQRVRQQSAAFL AGGTGA GWR QALACHHDFVAHRLS
Sbjct: 227 LFALMAHISDTNVYHRGGAEGAQRVRQQSAAFLAAGGTGAPGWRTQALACHHDFVAHRLS 286

Query: 241 PGGAADLLAAACLVHQAMALELERGA 266
           PGGAADLLAAACLVHQAMALELERGA
Sbjct: 287 PGGAADLLAAACLVHQAMALELERGA 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 893,383
Number of extensions: 38873
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)