BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0023.p (222 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 449 e-127 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 84 1e-17 gi|300310738|ref|YP_003774830.1| transcription regulator protein... 80 1e-16 gi|300314040|ref|YP_003778132.1| transcription regulator protein... 74 9e-15 gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 72 5e-14 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 449 bits (1154), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/222 (100%), Positives = 222/222 (100%) Query: 1 MDTPKTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVE 60 MDTPKTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVE Sbjct: 1 MDTPKTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVE 60 Query: 61 MRPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDA 120 MRPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDA Sbjct: 61 MRPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDA 120 Query: 121 NDPDAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQA 180 NDPDAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQA Sbjct: 121 NDPDAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQA 180 Query: 181 VVDAIISGDAEKTVDLLREHIMIQGQRFADLVASLHQLKSAA 222 VVDAIISGDAEKTVDLLREHIMIQGQRFADLVASLHQLKSAA Sbjct: 181 VVDAIISGDAEKTVDLLREHIMIQGQRFADLVASLHQLKSAA 222 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 100/207 (48%), Gaps = 17/207 (8%) Query: 5 KTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPR 64 +T +E + I+ I +++PG + E LA +G+SR P+REA+ +L ++ P Sbjct: 15 ETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPH 74 Query: 65 RGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAEL---LAAH---QACQAAR 118 GA V + + L+E+F++ E M RLAA+RM+ AE EL L H +A QA R Sbjct: 75 VGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDEAFQAGR 134 Query: 119 DANDPDAYFYLNEA---FHDHIYAGSHNGFLAD-QARALHRRLRPYRRLQLRVRDRLKSS 174 +Y E FH I S N L L++ R YR R + + Sbjct: 135 G-------YYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPRQA 187 Query: 175 FDEHQAVVDAIISGDAEKTVDLLREHI 201 F EH ++DA+ GD E L+R HI Sbjct: 188 FAEHHRILDALADGDGELADLLMRRHI 214 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 14/201 (6%) Query: 8 AEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGA 67 AE + +++ I +L PG + ET +A+ GVSRTP+R+AL +L G +E+ RRG Sbjct: 10 AEQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGW 69 Query: 68 IVAEIGPQQLIEMFEV-----MAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDAND 122 V I +L ++++ MA + +C + P AEL + A DA Sbjct: 70 KVCPIDFDRLDNLYDLRIVLEMAALDKLCSQ-------PEASAELTQLNAIWLAEPDARQ 122 Query: 123 PDAYFY--LNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQA 180 DA L+EAFH ++ A + N + + ++R RRL + R+ ++++EH Sbjct: 123 TDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGK 182 Query: 181 VVDAIISGDAEKTVDLLREHI 201 ++ I A + LLR HI Sbjct: 183 ILQLIAKRKATEAQILLRAHI 203 >gi|300314040|ref|YP_003778132.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 73.9 bits (180), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 19/229 (8%) Query: 1 MDTPKTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVE 60 +D P E + +I + I L+P + + + LAE+ GVSR PI +A L G +E Sbjct: 4 IDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREGFIE 63 Query: 61 MRPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAH--------Q 112 R+G +V + PQ+L+++++V A + + R A + A L AA + Sbjct: 64 DAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWK--SDAALRAAGERAGRALIE 121 Query: 113 ACQAARDANDPDAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRR-----LQLRV 167 A +A D D A + FH IY N + Q ALH + RR L V Sbjct: 122 AGRALADMRDLSARILADMDFHQFIYRSCGNPMIG-QTTALH--WQHIRRAMGAILSSEV 178 Query: 168 RDRLKSSFDEHQAVVDAIISGDAEKTVDLLREHIMIQGQRFADLVASLH 216 R L + ++EH+A++ A++ G L R+H A ++ S H Sbjct: 179 RSHL-AVWEEHEAILQAMLEGRPALADKLARQHAESAAAHLARVLTSAH 226 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 71.6 bits (174), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 88/190 (46%), Gaps = 6/190 (3%) Query: 15 IEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGAIVAEIGP 74 I E I +L+PG L E LA+ F VSRT +REAL L + GIV + RRG V E P Sbjct: 17 ITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVSARRGWFVIEPTP 76 Query: 75 QQLIEMFEVMAEFEAMCGRLAARRMTPAEHAEL--LAAHQACQAARDAN-DPDAYFYLNE 131 Q E FE E G L R+ P + L H A + A A D A YL Sbjct: 77 AQAREAFEARRVIE--LGLLRQARLRPVGDTAIGQLREHIAREEAAIAGADVGARSYLLG 134 Query: 132 AFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQAVVDAIISGDAE 191 FH + N LA+ R L R L + ++ + S EH +V+A+ GD E Sbjct: 135 DFHVCLAECLGNSLLAETLRDLTARTTLTAMLH-QSSEQAEDSCSEHVLIVEALERGDLE 193 Query: 192 KTVDLLREHI 201 + L+ +H+ Sbjct: 194 QAEQLMHDHL 203 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 499,579 Number of extensions: 14362 Number of successful extensions: 94 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 17 Length of query: 222 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 140 Effective length of database: 1,231,600 Effective search space: 172424000 Effective search space used: 172424000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)