BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0120.p (432 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0735 [U] COG0823 Periplasmic component of the Tol biopolymer ... 479 e-135 XF1897 [U] COG0823 Periplasmic component of the Tol biopolymer t... 325 2e-88 PA0972 [U] COG0823 Periplasmic component of the Tol biopolymer t... 319 8e-87 YPO1124 [U] COG0823 Periplasmic component of the Tol biopolymer ... 288 2e-77 VC1836 [U] COG0823 Periplasmic component of the Tol biopolymer t... 281 1e-75 >RSc0735 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Rso Ralstonia solanacearum Length = 432 Score = 479 bits (1234), Expect = e-135, Method: Compositional matrix adjust. Identities = 241/419 (57%), Positives = 307/419 (73%), Gaps = 10/419 (2%) Query: 18 MVAVAGLSFAPASQAQIRFEITGVGASQIPVAIAAFPGEESAPQQITSVVKADLARSGIF 77 MV G++ +AQ+ EI G G+SQ P+AIA F GE PQ IT++V+ADL SG F Sbjct: 20 MVLCVGVA-----RAQLYVEIAGAGSSQYPIAIANFQGESQIPQDITAIVRADLVHSGRF 74 Query: 78 KLIDNSDAL-SDSSAINYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSSQLSAL 136 +D + A+ DS A + W+ RGA A G+VTR D R+++R+RL+DT + L L Sbjct: 75 SNVDVAGAVVPDSPAPDLGAWKSRGAAAFVGGTVTRNGD-RYEIRFRLYDTAKGESLGGL 133 Query: 137 SIGAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGNEYRLEVADADGEGTQVA 196 ++ LRL AH+IAD IYQKL G G+F+TR+SYV+K G Y+L+++D+DG QVA Sbjct: 134 ALTRGEGQLRLAAHEIADYIYQKLIGDRGVFATRLSYVSKVGRRYQLQISDSDGANPQVA 193 Query: 197 LRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDG 256 L SNEPIISP+WSPDGTKVAYVSFE +KPVVY+ +L++ +R++++N KG+NSAPAWSPDG Sbjct: 194 LTSNEPIISPAWSPDGTKVAYVSFESRKPVVYVHDLISGRRAVISNQKGNNSAPAWSPDG 253 Query: 257 SRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSVYFTSDRSGGPQVY 316 R+AVAL+RDG TQ+Y +NADGSGLRRLT S+ IDTEP FSPDG S+YFTSDR G PQ+Y Sbjct: 254 RRVAVALSRDGNTQIYQVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQIY 313 Query: 317 KV---GLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLYALDLTNGQEIRLS 373 ++ G D GS QRVTF G YN SPR+SPDGK LA+ISR G F+LY DL+NG L+ Sbjct: 314 RMPTEGEDAGSAQRVTFKGGYNTSPRVSPDGKLLAYISRVGGAFKLYVQDLSNGDVTGLT 373 Query: 374 DGSRDQSPSFAPNGKYIMYATESGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGPFMK 432 D S D+SPSFA NGK+I+YAT G R LA VS DGR +Q L+ QAG +REP WGPFM+ Sbjct: 374 DTSYDESPSFAANGKFILYATRVGGRSVLAAVSTDGRTRQILSLQAGTVREPAWGPFMQ 432 >XF1897 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Xfa Xylella fastidiosa 9a5c Length = 430 Score = 325 bits (832), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 177/425 (41%), Positives = 256/425 (60%), Gaps = 15/425 (3%) Query: 21 VAGLSF---APASQAQIRFEITGVGASQIPVAIAAFPGEES--AP-QQITSVVKADLARS 74 + GL F A Q + +I G + P+A+ P +S AP ++SVV ADL RS Sbjct: 2 LVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYHDSVGAPATDVSSVVAADLNRS 61 Query: 75 GIFKLIDNSDAL---SDSSAINYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSS 131 G F+ + + + S I + WQ + + VG V G + V Y LFD Sbjct: 62 GQFRTLPLGQIIERPTHGSEIRFPTWQALKQDYIVVGRVLDARQGTYRVEYELFDVRNGK 121 Query: 132 QLSALSIGAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGNE----YRLEVAD 187 ++ L++ A+ +R AH++AD IY+K+TG+ G F TRI+YVT SG+ Y L VAD Sbjct: 122 RMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFTRIAYVTASGSHGAMRYALMVAD 181 Query: 188 ADGEGTQVALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSN 247 +DG Q +RS EP++SP WSPDG K+AYVSFE +YIQ++ T R +V++F+G N Sbjct: 182 SDGYNPQTIVRSAEPLLSPDWSPDGKKLAYVSFEKGGSSIYIQDIATGSRELVSSFRGIN 241 Query: 248 SAPAWSPDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSVYFTS 307 +AP+++PDG R+A++L+R G ++YV++ L +LTNS GIDTEP +S DG +YFTS Sbjct: 242 AAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLIQLTNSFGIDTEPAWSSDGKFIYFTS 301 Query: 308 DRSGGPQVYKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLYALDLTNG 367 DR G PQ+YKV GG+ RVTF G+YN + +S D K + ++++ +D ++G Sbjct: 302 DRGGRPQIYKVASVGGTATRVTFQGNYNATTSVSYDDKKIVVAQGSGNVYRIAMMDQSSG 361 Query: 368 QEI--RLSDGSRDQSPSFAPNGKYIMYATESGRRGSLAVVSVDGRIKQRLTTQAGDIREP 425 + LS GS D+SPSFAPN ++YA G RG L VS D R++QRL + D+REP Sbjct: 362 STVWNTLSTGSLDESPSFAPNASMVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREP 421 Query: 426 TWGPF 430 WGP+ Sbjct: 422 AWGPY 426 >PA0972 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Pae Pseudomonas aeruginosa Length = 432 Score = 319 bits (818), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 169/399 (42%), Positives = 247/399 (61%), Gaps = 13/399 (3%) Query: 46 IPVAIA--AFPGEESAPQQITSVVKADLARSGIFKLIDNSDALSD---SSAINYADWQKR 100 IP+A+ F G P+ +++++ DL SG F+ + + +S +S + + DW+ Sbjct: 35 IPIAVVPFGFQGGNVLPEDMSNIIGNDLRNSGYFEPLPRQNMISQPAQASEVIFRDWKAV 94 Query: 101 GANALAVGSVTRLADGRFDVRYRLFDTVQSSQLSALSIGAQPQLLRLTAHKIADDIYQKL 160 G N + VG++ A GR V+Y LFD Q+ S+ LR +H IAD ++KL Sbjct: 95 GVNYVMVGNIVP-AGGRLQVQYALFDVGTEQQVLTGSVTGSTDQLRDMSHYIADQSFEKL 153 Query: 161 TGIPGIFSTRISYVTKS-----GNEYRLEVADADGEGTQVALRSNEPIISPSWSPDGTKV 215 TGI G FST++ YVT Y L+ +D DG L+S EPI+SP +SPDG ++ Sbjct: 154 TGIKGAFSTKMLYVTAERFSVDNTRYTLQRSDYDGARPVTLLQSREPIVSPRFSPDGRRI 213 Query: 216 AYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDGSRLAVALTRDGLTQVYVIN 275 AYVSFE K+P ++IQ + T +R + NF+G N APA+SPDG+RLA L+RDG ++YV++ Sbjct: 214 AYVSFEQKRPRIFIQYVDTGRREQITNFEGLNGAPAFSPDGNRLAFVLSRDGNPEIYVMD 273 Query: 276 ADGSGLRRLTNSAGIDTEPQFSPDGGSVYFTSDRSGGPQVYKVGLDGGSPQRVTFNGSYN 335 LRRLTN+ IDTEP + DG ++YFTSDR G PQ+YK+ ++ G+ RVTF G+YN Sbjct: 274 LGSRALRRLTNNLAIDTEPFWGKDGSTLYFTSDRGGKPQIYKMNVNSGAVDRVTFIGNYN 333 Query: 336 ISPRISPDGKTLAFISRRDGL--FQLYALDLTNGQEIRLSDGSRDQSPSFAPNGKYIMYA 393 +P++S D KTL + R+ G FQ+ A DL G LS+ + D SP+ APNG ++YA Sbjct: 334 ANPKLSADEKTLVMVHRQQGYTNFQIAAQDLQRGNLRVLSNTTLDDSPTVAPNGTMLIYA 393 Query: 394 TESGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGPFMK 432 T RG L +VS++GR++ L T GD+REP+W P++ Sbjct: 394 TRQQDRGVLMLVSINGRVRIPLPTAQGDVREPSWSPYLN 432 >YPO1124 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Ype Yersinia pestis Length = 430 Score = 288 bits (736), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 164/416 (39%), Positives = 240/416 (57%), Gaps = 10/416 (2%) Query: 26 FAPASQAQIRFEITGVGASQIPVAIAAFP--GEESAPQQITSVVKADLARSGIFKLIDNS 83 +A A++R EIT S P+ + F G + P++I ++V ADL SG F ID + Sbjct: 15 WASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAA 74 Query: 84 ---DALSDSSAINYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQS--SQLSALSI 138 S ++ + A W G +A+ VG V ADG + V Y+L DT S S L+ Sbjct: 75 RMPQQPSTAAEVTPAAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGSAGSILAQNQY 134 Query: 139 GAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGN---EYRLEVADADGEGTQV 195 Q LR +AH ++D++++KLTGI G F TRI+YV K+ + L V+D DG V Sbjct: 135 KVTKQWLRYSAHTVSDEVFEKLTGIKGAFRTRIAYVVKTNGGKFPHELRVSDYDGYNQFV 194 Query: 196 ALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPD 255 RS EP++SP+WSPDG+K+AYV+FE K + IQ L VA+F N APA+SPD Sbjct: 195 VHRSPEPLMSPAWSPDGSKIAYVTFESGKSALVIQTLANGAIRQVASFPRHNGAPAFSPD 254 Query: 256 GSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSVYFTSDRSGGPQV 315 G++LA AL++ G +YV++ + ++T+ +TEP + PD ++ +TSD+ G PQV Sbjct: 255 GTKLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQV 314 Query: 316 YKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLYALDLTNGQEIRLSDG 375 YKV ++GG PQR+T+ GS N + +SPDGK L +S G + DL G L+D Sbjct: 315 YKVNINGGVPQRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAKQDLETGAVQVLTDT 374 Query: 376 SRDQSPSFAPNGKYIMYATESGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGPFM 431 D++PS APNG ++Y++ G L +VS DGR K RL G ++ P W P++ Sbjct: 375 LLDETPSIAPNGTMVIYSSTQGLGSVLQLVSTDGRFKARLPATDGQVKFPAWSPYL 430 >VC1836 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Vch Vibrio cholerae Length = 450 Score = 281 bits (720), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 161/443 (36%), Positives = 244/443 (55%), Gaps = 29/443 (6%) Query: 18 MVAVAGLSFAPASQAQIRFEITGVGASQIPVAIAAF--PGEESAPQQITSVVKADLARSG 75 ++ + G F+ + A + IT S P+AI F G P+ +++V+ +DL RSG Sbjct: 8 VLMLIGTGFSNIANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIASDLQRSG 67 Query: 76 IFKLIDNSDALS---DSSAINYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSS- 131 F + S +N+ W G ++L G++T+ A+G + + Y+L D V+ Sbjct: 68 KFSPVPTSKMPQTPYSEEQVNFGKWTSMGVDSLLTGTITQNAEGSYVISYQLVDIVRGQL 127 Query: 132 ---QLSALSIGAQPQL-----------------LRLTAHKIADDIYQKLTGIPGIFSTRI 171 Q ALS Q L +R AH+IAD +Y++LTG G F TRI Sbjct: 128 TQGQSKALSQDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGERGAFLTRI 187 Query: 172 SYVT---KSGNEYRLEVADADGEGTQVALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVY 228 +YV K Y+L +AD DG ++ LRS +P++SP+WSPDG +AYVSF+ + +Y Sbjct: 188 AYVVVNDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIY 247 Query: 229 IQNLVTRQRSIVANFKGSNSAPAWSPDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSA 288 + N+ + +R + +F N AP +SPDG LA+ L++ G QVY ++ L +T+ Sbjct: 248 MMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGR 307 Query: 289 GIDTEPQFSPDGGSVYFTSDRSGGPQVYKVGLDGGSPQRVTFNGSYNISPRISPDGKTLA 348 +TEP + PDG S+ FTSDR G PQ+Y+V L GG +R+T+ GS N+ +I+PDGK L Sbjct: 308 SNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLV 367 Query: 349 FISRRDGLFQLYALDLTNGQEIRLSDGSRDQSPSFAPNGKYIMYATESGRRGSLAVVSVD 408 ++R D F L DL G L+ D+SPS APNG ++Y++ + L++VS+D Sbjct: 368 MVNRSDSGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYNKANVLSMVSID 427 Query: 409 GRIKQRLTTQAGDIREPTWGPFM 431 GR K RL G +R P W PF+ Sbjct: 428 GRFKARLPATNGRVRAPAWSPFL 450