BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0113.p         (159 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0728 [K] COG1327 Predicted transcriptional regulator, consist...   215   3e-56
VC2272 [K] COG1327 Predicted transcriptional regulator, consists...   177   7e-45
ybaD [K] COG1327 Predicted transcriptional regulator, consists o...   164   5e-41
ZybaD [K] COG1327 Predicted transcriptional regulator, consists ...   164   5e-41
ECs0466 [K] COG1327 Predicted transcriptional regulator, consist...   164   5e-41

>RSc0728 [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Rso Ralstonia
           solanacearum
          Length = 149

 Score =  215 bits (548), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 100/146 (68%), Positives = 124/146 (84%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTMPVIVKKNGSRTD 60
           MKCPFC H  T V+DTR+SE+G ++RRRRRC +CD+RFTTYERIEL  P +VKKNGSR D
Sbjct: 1   MKCPFCGHAATQVIDTRMSEEGDTVRRRRRCESCDRRFTTYERIELFFPAVVKKNGSRVD 60

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDMAIQSIQDKLLQSGEREVMSGQVGELVMRELKRLD 120
           +D  K++ S+ LALRKRPVSAEA+D AI  I++KLL  GE+E+ S ++GELVMRELKRLD
Sbjct: 61  YDRNKVKDSMRLALRKRPVSAEAIDEAIARIEEKLLSHGEKEIGSDRIGELVMRELKRLD 120

Query: 121 KIAYIRFASVYKSFEDVTEFQDVIDE 146
           KI YIRFASVY+SFEDV+EF+D++DE
Sbjct: 121 KIGYIRFASVYRSFEDVSEFRDMLDE 146


>VC2272 [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Vch Vibrio cholerae
          Length = 156

 Score =  177 bits (450), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 84/144 (58%), Positives = 108/144 (75%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTMPVIVKKNGSRTD 60
           M CPFC+  DT V+D+RL  DGH +RRRR+C  C++RFTT+E  EL MP ++K NG+R  
Sbjct: 8   MHCPFCSENDTKVIDSRLVADGHQVRRRRQCLACNERFTTFETAELVMPRVIKSNGNREP 67

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDMAIQSIQDKLLQSGEREVMSGQVGELVMRELKRLD 120
           FD  K+ G L  AL KRPVSA+A+++AI +I+ KL  +GEREV S  +G LVM +LK LD
Sbjct: 68  FDEEKMIGGLQRALEKRPVSADAIELAISTIKSKLRATGEREVPSKLIGNLVMEQLKVLD 127

Query: 121 KIAYIRFASVYKSFEDVTEFQDVI 144
           K+AYIRFASVY+SFEDV EF + I
Sbjct: 128 KVAYIRFASVYRSFEDVREFGEEI 151


>ybaD [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Eco Escherichia coli K12
          Length = 149

 Score =  164 bits (416), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/144 (55%), Positives = 105/144 (72%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTMPVIVKKNGSRTD 60
           M CPFC   DT V+D+RL  +G S+RRRR+C  C++RFTT+E  EL MP +VK N  R  
Sbjct: 1   MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREP 60

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDMAIQSIQDKLLQSGEREVMSGQVGELVMRELKRLD 120
           F+  KLR  ++ AL KRPVS++ V+MAI  I+ +L  +GEREV S  +G LVM +LK+LD
Sbjct: 61  FNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLD 120

Query: 121 KIAYIRFASVYKSFEDVTEFQDVI 144
           K+AYIRFASVY+SFED+ EF + I
Sbjct: 121 KVAYIRFASVYRSFEDIKEFGEEI 144


>ZybaD [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains EcZ Escherichia coli
           O157:H7 EDL933
          Length = 149

 Score =  164 bits (416), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/144 (55%), Positives = 105/144 (72%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTMPVIVKKNGSRTD 60
           M CPFC   DT V+D+RL  +G S+RRRR+C  C++RFTT+E  EL MP +VK N  R  
Sbjct: 1   MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREP 60

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDMAIQSIQDKLLQSGEREVMSGQVGELVMRELKRLD 120
           F+  KLR  ++ AL KRPVS++ V+MAI  I+ +L  +GEREV S  +G LVM +LK+LD
Sbjct: 61  FNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLD 120

Query: 121 KIAYIRFASVYKSFEDVTEFQDVI 144
           K+AYIRFASVY+SFED+ EF + I
Sbjct: 121 KVAYIRFASVYRSFEDIKEFGEEI 144


>ECs0466 [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Ecs Escherichia coli
           O157:H7
          Length = 149

 Score =  164 bits (416), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/144 (55%), Positives = 105/144 (72%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTMPVIVKKNGSRTD 60
           M CPFC   DT V+D+RL  +G S+RRRR+C  C++RFTT+E  EL MP +VK N  R  
Sbjct: 1   MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREP 60

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDMAIQSIQDKLLQSGEREVMSGQVGELVMRELKRLD 120
           F+  KLR  ++ AL KRPVS++ V+MAI  I+ +L  +GEREV S  +G LVM +LK+LD
Sbjct: 61  FNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLD 120

Query: 121 KIAYIRFASVYKSFEDVTEFQDVI 144
           K+AYIRFASVY+SFED+ EF + I
Sbjct: 121 KVAYIRFASVYRSFEDIKEFGEEI 144