BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0110.p         (228 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1980 [S] COG3148 Uncharacterized conserved protein Vch Vibrio ...    92   1e-18
PA1424 Non COG                                                         85   1e-16

>VC1980 [S] COG3148 Uncharacterized conserved protein Vch Vibrio cholerae
          Length = 200

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 21/201 (10%)

Query: 15  CPICQRALTACICHWTSPIDHAVDVLILQHPLEVSNAKNSVRLLHLSLPYSKLVVGSVF- 73
           C  C +A  AC+C     ++ AV+++ILQHP E      + R+L LSL   +L+VG  F 
Sbjct: 5   CSECGKARKACLCPSIVALESAVELIILQHPTEQKRPLGTARILSLSLANCRLLVGEDFR 64

Query: 74  DAEELHAMMHAPSRLRGVSSTEPVHPVLLYTDDVCTPETRYFDARTMMVDKQETLKRVRL 133
           + +EL+ ++  P           V   +LY ++          A+        T ++ R+
Sbjct: 65  EHDELNQLLAEPD----------VDYYVLYPNE---------HAQECTKISLTTARKTRV 105

Query: 134 VIIDGTWRKSRKMLFENPILQTLPRMMLIDTPTSRYTIRKSHKPEQLATLEATGYALMQL 193
           +++DGTW+K+ KM   N  L  LP + L D     Y IRK+     L+T+EA GY L+Q 
Sbjct: 106 ILLDGTWKKAYKMWQINTQLHDLPSLHLPDECVGHYRIRKAPDDTALSTVEA-GYHLLQQ 164

Query: 194 ERNSEKYHPLLTAFDNFVLQQ 214
            +    + PLL  FD  +  Q
Sbjct: 165 WQPERDFSPLLKVFDAMIQYQ 185


>PA1424 Non COG
          Length = 203

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 25/215 (11%)

Query: 12  RLLCPICQRALTACICHWTSPIDHAVDVLILQHPLEVSNAKNSVRLLHLSLPYSKLVVGS 71
           R+ C  C R  + C+C     +     VL+LQHP EV +A N+  L  L L  ++L VG 
Sbjct: 3   RIRCERCARPASHCLCALIPSLPSRTRVLVLQHPSEVGHALNTAGLAVLGLCNAELRVGE 62

Query: 72  VFDAEELHAMMHAPSRLRGVSSTEPVHPVLLYTDDVCTPETRYFDARTMMVDKQETLKRV 131
            F  E          R+ G  +       LL+  +               +  +   + +
Sbjct: 63  RFAEETW--------RVPGYRA------CLLFPGEQ--------ARALAEMAAEAAGEPL 100

Query: 132 RLVIIDGTWRKSRKMLFENPILQTLPRMMLIDTPTSRYTIRKSHKPEQLATLEATGYALM 191
            LV+ DGTWRK+RK+L  NP L  LPR+ L +   SRY +RK+     L+T+EA   AL 
Sbjct: 101 LLVVPDGTWRKARKLLHLNPALAALPRVSLAEGMASRYRLRKAPGEGALSTIEAIAAALD 160

Query: 192 QLERNSEKYHPLLTAFDNFVLQQGYMRMHGQATRR 226
           +LE     +  LL  FD  +  +G +   G+ T R
Sbjct: 161 ELE-APRTHEALLKPFDALI--EGQIAAMGEDTYR 192