BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0106.p (376 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2713 [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase ... 619 e-177 NMA0928 [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase ... 585 e-167 NMB0719 [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase ... 579 e-165 VC0741 [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase V... 518 e-147 STM0405 [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase ... 504 e-142 >RSc2713 [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase Rso Ralstonia solanacearum Length = 383 Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust. Identities = 288/367 (78%), Positives = 324/367 (88%), Gaps = 7/367 (1%) Query: 1 MLEFTLLKTDGKARRGRVKLNHGTVETPIFMPVGTYGSVKAMSPLELKEINAQIILGNTF 60 ML F LL TDG ARRGR+ LNHG VETPIFMPVGTYG+VKAMSP+ELK+I AQIILGNTF Sbjct: 1 MLNFDLLTTDGLARRGRMTLNHGVVETPIFMPVGTYGAVKAMSPVELKDIGAQIILGNTF 60 Query: 61 HLWLRPGLEVVSKFGGLHKFIGWDKPILTDSGGFQVFSLGEMRKITEEGVHFASPINGDR 120 HLWLRP LEV+ GLH F+GWDKP+LTDSGGFQVFSLG++RKITEEGVHFASPINGDR Sbjct: 61 HLWLRPALEVIDAHKGLHGFVGWDKPMLTDSGGFQVFSLGDLRKITEEGVHFASPINGDR 120 Query: 121 LFLSPEISMQIQRVLNSDIVMQFDECTPYEIDGRPATREEAGKSMRMSLRWAKRSKDEFD 180 LFLSPEISMQIQR LNSDIVMQFDECTPY+IDGRPAT EA SMRMSLRWA+RS++EF+ Sbjct: 121 LFLSPEISMQIQRRLNSDIVMQFDECTPYQIDGRPATEAEAAASMRMSLRWAQRSRNEFE 180 Query: 181 RGENPNALFGIVQGGMFEGLRDESLAGLEEL-------GFDGFAIGGLSVGEPKEDMMRV 233 R NPNALFGIVQGGMFE LRDESLAGL+ + GF G+AIGGLSVGEPKEDM+RV Sbjct: 181 RERNPNALFGIVQGGMFEPLRDESLAGLQAIDADAGGQGFGGYAIGGLSVGEPKEDMIRV 240 Query: 234 LEHVGPRLPADKPHYLMGVGTPEDLVEGVSNGVDMFDCVMPTRNARNGWIFTRYGDVKIK 293 L+HV PRLPA+KPHYLMGVGTPEDLV GV+ G+DMFDCVMPTRNARNGW+FTR+GD+KIK Sbjct: 241 LQHVAPRLPANKPHYLMGVGTPEDLVAGVAAGIDMFDCVMPTRNARNGWLFTRFGDIKIK 300 Query: 294 NAKYKNDDRPFDESCDCYACKNFSRAYLHHLHRAGEILGARMNTVHNLHYYLQLMQEMRD 353 NA ++ND RP DE+C CY C+NFSRAYLHHL R GEILGAR+NT+HNLHYYL+LM +MR Sbjct: 301 NAVHRNDPRPLDETCGCYTCRNFSRAYLHHLQRVGEILGARLNTIHNLHYYLELMADMRT 360 Query: 354 AIDAGTF 360 AI++ +F Sbjct: 361 AIESHSF 367 >NMA0928 [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase NmA Neisseria meningitidis Z2491 Length = 371 Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust. Identities = 278/376 (73%), Positives = 319/376 (84%), Gaps = 5/376 (1%) Query: 1 MLEFTLLKTDGKARRGRVKLNHGTVETPIFMPVGTYGSVKAMSPLELKEINAQIILGNTF 60 ML+FTL K DG ARRG ++LNHG +ETP+FMPVGTYGSVKAM+P L +I AQIILGNT+ Sbjct: 1 MLKFTLHKKDGYARRGTLELNHGKIETPVFMPVGTYGSVKAMNPQNLHDIKAQIILGNTY 60 Query: 61 HLWLRPGLEVVSKFGGLHKFIGWDKPILTDSGGFQVFSLGEMRKITEEGVHFASPINGDR 120 HLWLRPGLEVV +FGGLH FIGWDKPILTDSGGFQVFSL +MRK+TEEG F SPINGD+ Sbjct: 61 HLWLRPGLEVVEQFGGLHGFIGWDKPILTDSGGFQVFSLSDMRKLTEEGCTFKSPINGDK 120 Query: 121 LFLSPEISMQIQRVLNSDIVMQFDECTPYEIDGRPATREEAGKSMRMSLRWAKRSKDEFD 180 LFLSPEISM+IQ VLNSDI MQ DECTP E ATRE+A KS++MSLRWA+RSK F+ Sbjct: 121 LFLSPEISMKIQTVLNSDIAMQLDECTPGE-----ATREQARKSLQMSLRWAERSKKAFE 175 Query: 181 RGENPNALFGIVQGGMFEGLRDESLAGLEELGFDGFAIGGLSVGEPKEDMMRVLEHVGPR 240 +NPNALFGIVQG M+E LR+ESL GLEEL F G AIGGLSVGEPK +M R+L VGP Sbjct: 176 DLKNPNALFGIVQGAMYEDLREESLKGLEELDFPGLAIGGLSVGEPKPEMYRMLRAVGPI 235 Query: 241 LPADKPHYLMGVGTPEDLVEGVSNGVDMFDCVMPTRNARNGWIFTRYGDVKIKNAKYKND 300 LP KPHYLMGVGTPEDLV GV++GVDMFDCVMPTRNARNGW+FTR+GD+KIKNAK+K D Sbjct: 236 LPEHKPHYLMGVGTPEDLVYGVAHGVDMFDCVMPTRNARNGWLFTRFGDLKIKNAKHKLD 295 Query: 301 DRPFDESCDCYACKNFSRAYLHHLHRAGEILGARMNTVHNLHYYLQLMQEMRDAIDAGTF 360 RP DESC CYAC+NFSRAYLHHLHRAGEILGA++NT+HNLH+Y +M EMR+A++ G F Sbjct: 296 KRPIDESCTCYACQNFSRAYLHHLHRAGEILGAQLNTIHNLHFYQVIMAEMREAVEQGKF 355 Query: 361 QDFVKKFKEDRARGVD 376 D+ +F E+RARG D Sbjct: 356 ADWQAQFHENRARGTD 371 >NMB0719 [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase Nme Neisseria meningitidis MC58 Length = 371 Score = 579 bits (1492), Expect = e-165, Method: Compositional matrix adjust. Identities = 272/376 (72%), Positives = 317/376 (84%), Gaps = 5/376 (1%) Query: 1 MLEFTLLKTDGKARRGRVKLNHGTVETPIFMPVGTYGSVKAMSPLELKEINAQIILGNTF 60 ML+FTL K DG ARRG ++LNHG +ETP+FMPVGTYGSVKAM+P L +I AQIILGNT+ Sbjct: 1 MLKFTLHKKDGLARRGTLELNHGKIETPVFMPVGTYGSVKAMNPQNLHDIKAQIILGNTY 60 Query: 61 HLWLRPGLEVVSKFGGLHKFIGWDKPILTDSGGFQVFSLGEMRKITEEGVHFASPINGDR 120 HLWLRPGLEV+ +FGGLH FIGWDKPILTDSGGFQVFSL +MRK+TEEG F SPINGD+ Sbjct: 61 HLWLRPGLEVIGQFGGLHGFIGWDKPILTDSGGFQVFSLSDMRKLTEEGCTFKSPINGDK 120 Query: 121 LFLSPEISMQIQRVLNSDIVMQFDECTPYEIDGRPATREEAGKSMRMSLRWAKRSKDEFD 180 LFLSPEISM+IQ VLNSDI MQ DECTP E ATRE+A KS++MSLRWA+RSK F+ Sbjct: 121 LFLSPEISMKIQTVLNSDIAMQLDECTPGE-----ATREQARKSLQMSLRWAERSKKAFE 175 Query: 181 RGENPNALFGIVQGGMFEGLRDESLAGLEELGFDGFAIGGLSVGEPKEDMMRVLEHVGPR 240 +NPNALFGIVQG M+E LR+ESL GLE+ F G A+GGLSVGEPK +M R+L VGP Sbjct: 176 DLKNPNALFGIVQGAMYEDLREESLRGLEQFDFPGLAVGGLSVGEPKPEMYRMLRAVGPI 235 Query: 241 LPADKPHYLMGVGTPEDLVEGVSNGVDMFDCVMPTRNARNGWIFTRYGDVKIKNAKYKND 300 LP KPHYLMGVGTPEDLV GV++G+DMFDCVMPTRNARNGW+FTR+GD+KIKNAK+K D Sbjct: 236 LPEHKPHYLMGVGTPEDLVYGVAHGIDMFDCVMPTRNARNGWLFTRFGDLKIKNAKHKLD 295 Query: 301 DRPFDESCDCYACKNFSRAYLHHLHRAGEILGARMNTVHNLHYYLQLMQEMRDAIDAGTF 360 RP DESC CYAC+NFSRAYLHHLHR GEILGA++NT+HNLH+Y +M EMR+A++ G F Sbjct: 296 KRPIDESCTCYACQNFSRAYLHHLHRTGEILGAQLNTIHNLHFYQVIMAEMREAVEQGKF 355 Query: 361 QDFVKKFKEDRARGVD 376 D+ +F E+RARG D Sbjct: 356 ADWQARFHENRARGTD 371 >VC0741 [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase Vch Vibrio cholerae Length = 379 Score = 518 bits (1334), Expect = e-147, Method: Compositional matrix adjust. Identities = 246/374 (65%), Positives = 291/374 (77%), Gaps = 5/374 (1%) Query: 2 LEFTLLKTDGKARRGRVKLNHGTVETPIFMPVGTYGSVKAMSPLELKEINAQIILGNTFH 61 L+F L K +G ARRG++ GTV+TP FMPVGTYG+VK M+P E+KE AQI+LGNTFH Sbjct: 3 LKFELKKKNGNARRGQLIFERGTVQTPAFMPVGTYGTVKGMTPEEVKETGAQILLGNTFH 62 Query: 62 LWLRPGLEVVSKFGGLHKFIGWDKPILTDSGGFQVFSLGEMRKITEEGVHFASPINGDRL 121 LWLRPG EV+ G LH F+ W PILTDSGGFQVFSLG++RKITEEGVHF +P+NGD++ Sbjct: 63 LWLRPGQEVMKMHGDLHDFMNWQGPILTDSGGFQVFSLGDIRKITEEGVHFRNPVNGDKI 122 Query: 122 FLSPEISMQIQRVLNSDIVMQFDECTPYEIDGRPATREEAGKSMRMSLRWAKRSKDEFDR 181 F+ E SM+IQ+ L SDIVM FDECTPY PAT +EA KSM MSLRWAKRS+D FD+ Sbjct: 123 FMDAEKSMEIQKDLGSDIVMIFDECTPY-----PATHDEAKKSMEMSLRWAKRSRDHFDK 177 Query: 182 GENPNALFGIVQGGMFEGLRDESLAGLEELGFDGFAIGGLSVGEPKEDMMRVLEHVGPRL 241 ENPN LFGIVQGG++E LRD S+ GL E+GFDG+A+GGL+VGEPKEDM RVLEH P+L Sbjct: 178 LENPNNLFGIVQGGVYEDLRDVSVKGLTEIGFDGYAVGGLAVGEPKEDMHRVLEHTCPQL 237 Query: 242 PADKPHYLMGVGTPEDLVEGVSNGVDMFDCVMPTRNARNGWIFTRYGDVKIKNAKYKNDD 301 P DKP YLMGVG PEDLVEGV G+DMFDCVMPTRNARNG +F G +KI+NA +K D Sbjct: 238 PEDKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTGGVIKIRNAAHKTDT 297 Query: 302 RPFDESCDCYACKNFSRAYLHHLHRAGEILGARMNTVHNLHYYLQLMQEMRDAIDAGTFQ 361 P D CDCY CKN+S++YLHHL R EILGAR+NT+HNL YY +LM+ +R AID F Sbjct: 298 TPLDPHCDCYTCKNYSKSYLHHLDRCNEILGARLNTIHNLRYYQRLMESIRKAIDEDRFD 357 Query: 362 DFVKKFKEDRARGV 375 FV +F R R V Sbjct: 358 QFVAEFYARRNREV 371 >STM0405 [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase Sty Salmonella typhimurium LT2 Length = 375 Score = 504 bits (1297), Expect = e-142, Method: Compositional matrix adjust. Identities = 241/374 (64%), Positives = 289/374 (77%), Gaps = 5/374 (1%) Query: 2 LEFTLLKTDGKARRGRVKLNHGTVETPIFMPVGTYGSVKAMSPLELKEINAQIILGNTFH 61 ++F L TDG+ARRGR+ + G VETP FMPVGTYG+VK M+P E++ AQIILGNTFH Sbjct: 1 MKFELDTTDGRARRGRLVFDRGVVETPAFMPVGTYGTVKGMTPEEVEATGAQIILGNTFH 60 Query: 62 LWLRPGLEVVSKFGGLHKFIGWDKPILTDSGGFQVFSLGEMRKITEEGVHFASPINGDRL 121 LWLRPG E++ G LH F+ W PILTDSGGFQVFSLG++RKITE+GVHF +PINGD + Sbjct: 61 LWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIRKITEQGVHFRNPINGDPI 120 Query: 122 FLSPEISMQIQRVLNSDIVMQFDECTPYEIDGRPATREEAGKSMRMSLRWAKRSKDEFDR 181 FL PE SM+IQ L SDIVM FDECTPY PA + A +SM MSLRWAKRS+D FD Sbjct: 121 FLDPEKSMEIQYDLGSDIVMIFDECTPY-----PADWDYAKRSMEMSLRWAKRSRDRFDS 175 Query: 182 GENPNALFGIVQGGMFEGLRDESLAGLEELGFDGFAIGGLSVGEPKEDMMRVLEHVGPRL 241 N NALFGI+QG ++E LRD S+ GL E+GFDG+A+GGL+VGEPK DM R+LEHV P++ Sbjct: 176 LGNKNALFGIIQGSVYEDLRDISVKGLVEIGFDGYAVGGLAVGEPKADMHRILEHVCPQI 235 Query: 242 PADKPHYLMGVGTPEDLVEGVSNGVDMFDCVMPTRNARNGWIFTRYGDVKIKNAKYKNDD 301 PADKP YLMGVG PEDLVEGV G+DMFDCVMPTRNARNG +F G VKI+NAK+K+D Sbjct: 236 PADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTDGVVKIRNAKHKSDT 295 Query: 302 RPFDESCDCYACKNFSRAYLHHLHRAGEILGARMNTVHNLHYYLQLMQEMRDAIDAGTFQ 361 P D CDCY C+N+SRAYLHHL R EILGAR+NT+HNL YY +LM +R AI+ G + Sbjct: 296 SPLDAECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHNLRYYQRLMAGLRKAIEEGKLE 355 Query: 362 DFVKKFKEDRARGV 375 FV +F + + R V Sbjct: 356 SFVTEFYQRQGRPV 369