BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0093.p (634 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2715 [U] COG0342 Preprotein translocase subunit SecD Rso Rals... 828 0.0 NMB0607 [U] COG0342 Preprotein translocase subunit SecD Nme Neis... 623 e-178 NMA0812 [U] COG0342 Preprotein translocase subunit SecD NmA Neis... 622 e-178 YPO3189 [U] COG0342 Preprotein translocase subunit SecD Ype Yers... 516 e-146 secD [U] COG0342 Preprotein translocase subunit SecD Eco Escheri... 514 e-145 >RSc2715 [U] COG0342 Preprotein translocase subunit SecD Rso Ralstonia solanacearum Length = 626 Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/619 (64%), Positives = 486/619 (78%), Gaps = 1/619 (0%) Query: 1 MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQG 60 MNRY LWKY +I++AL G +YT+PNFFGE+PAVQ+SS K+T++V+ A +V+ +L Sbjct: 1 MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVRVDLATQKQVEDLLAAA 60 Query: 61 NLGAESVAFDNAGSQPSVRARFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQ 120 NL V FD G+ SVR RFA TD Q KAK L + LN+DP+DPTYIVA NLL +P+ Sbjct: 61 NLKPNGVFFDMNGTSGSVRVRFADTDTQLKAKDALARGLNSDPNDPTYIVALNLLSGSPR 120 Query: 121 WLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRSLLRDKNIRHSGINRS 180 WL ++HA PM+LGLDLRGGVHFL+QVD+ L K+L + +R+ LRDK +RHSGI RS Sbjct: 121 WLTAIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLAGDIRTQLRDKGVRHSGIERS 180 Query: 181 GDSIEISFRDADTRNKARAALGE-LQEMVLTDAGSGDDLKLIATLRPEALKQTQEDGVKQ 239 G +I I F + D ++AR L + +E+ T + D L T A+K+ Q++ VKQ Sbjct: 181 GTTISIKFTNPDEADRARGLLADSARELAFTVDKTADGATLTGTFTAAAMKEVQDNAVKQ 240 Query: 240 NISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDESVV 299 N+ TL RVNELGV+EP+IQ+QG DRIVV+LPGVQD ++AKDIIGRTATLE R+ D + Sbjct: 241 NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPNAT 300 Query: 300 RGTEETSAIPFGSELFKIGKGAPVVLNKEPVLTGDYISNASASFDENHQPAVSIDLNGDG 359 T +P G ELF G+GAPV+L K+ + TGD I++ASA FD+NH P+V I L+G G Sbjct: 301 GIPRATDPVPLGDELFTQGRGAPVLLQKQVIFTGDRINSASAGFDQNHNPSVDITLDGQG 360 Query: 360 GRKMREATRDKVGKAMAIVLFEKGKGEVLTVATIRSELGSRFQITGMGSPEAASDLALLL 419 GR +R+ +RD +GK M IVLFEKGKGEVLTVATI+SELGSRFQITG+GS E+ASDLALLL Sbjct: 361 GRMLRDVSRDNIGKRMGIVLFEKGKGEVLTVATIQSELGSRFQITGIGSVESASDLALLL 420 Query: 420 RAGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYGFLAMAVFMVIYYQLFGFFSALALS 479 RAGSLAAPM+IIEERTIGP LGADNIKKGF+S YGF A++VFMV+YY LFG FS +AL Sbjct: 421 RAGSLAAPMEIIEERTIGPSLGADNIKKGFNSAAYGFAAISVFMVLYYMLFGAFSVVALG 480 Query: 480 VNVLLLVALLSTLQVTLTLPGIAAIALALGMAIDSNVLINERIREELRAGNSPQAAIAAG 539 VNV LL+A+LS LQ TLTLPGIAAIALALGMAID+NVLINER+REELR G SPQ AIAAG Sbjct: 481 VNVFLLIAILSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGASPQMAIAAG 540 Query: 540 FDRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILTSMFSAVFFSRGVVNLWY 599 F+RAWATILDSNVTTLIAGLALL FGSG +RGFAVVHCLGILTSMFSAVFF+R +VNLWY Sbjct: 541 FERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWY 600 Query: 600 GRKKRLSGLAIGQIWKPEG 618 GRKK+L LAIGQ+WKP G Sbjct: 601 GRKKKLQSLAIGQVWKPAG 619 >NMB0607 [U] COG0342 Preprotein translocase subunit SecD Nme Neisseria meningitidis MC58 Length = 618 Score = 623 bits (1607), Expect = e-178, Method: Compositional matrix adjust. Identities = 322/626 (51%), Positives = 427/626 (68%), Gaps = 20/626 (3%) Query: 1 MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQG 60 MNRY LWKY LIV + +Y++PN FGE+PAVQ+S+ + + + +VD LK Sbjct: 2 MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALKNA 61 Query: 61 NLGAESV-AFDNAGSQPSVRARFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTP 119 + + + DN S++ RF T+ Q KA+ ++E L YI A NLL ++P Sbjct: 62 GIQTDGMFVVDN-----SLKVRFKDTETQLKARDVIENTLGEG-----YITALNLLADSP 111 Query: 120 QWLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRSLLRDKNIRHSGINR 179 +W+ + A PM+LGLDLRGGVHF MQVD+KA + K + +R LR + IR + + Sbjct: 112 EWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQ 171 Query: 180 SGDSIEISFRDADTRNKARAALGEL-QEMVLTDAGSGDDLKLIATLRPEALKQTQEDGVK 238 +G+S+ + +DA KA L +L E L GS ++ TL EA+ + D VK Sbjct: 172 AGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGS----NIVLTLSEEAVNKVCSDAVK 227 Query: 239 QNISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDESV 298 QNI+TL RVNELGVAEP+IQ+ GADRIVV+LPGVQD ++AKDIIGRTATLE+RMV++ Sbjct: 228 QNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDP 287 Query: 299 VRGTEETSA-IPFGSELFKIGKGAPVVL--NKEPVLTGDYISNASASFDENHQPAVSIDL 355 + E +P G EL G P +L +K+ LTGD I++A SFD+ PAVS+ L Sbjct: 288 AKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQPSFDQMGAPAVSLSL 347 Query: 356 NGDGGRKMREATRDKVGKAMAIVLFEKGKGEVLTVATIRSEL-GSRFQITGMGSPEAASD 414 + GG E T VGK MA+VL ++GK EV+T IR+ + G R +I+G + A+D Sbjct: 348 DSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGRVEISGSMTTAEAND 407 Query: 415 LALLLRAGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYGFLAMAVFMVIYYQLFGFFS 474 +LLLRAGSLAAPM I+EERTIGP LG +NI+KGF S L+GF +A FMV+YY+L GFFS Sbjct: 408 TSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVAAFMVVYYRLMGFFS 467 Query: 475 ALALSVNVLLLVALLSTLQVTLTLPGIAAIALALGMAIDSNVLINERIREELRAGNSPQA 534 +ALS N+L L+ +LS +Q TLTLPG+AA+AL LGMAIDSNVLINERIREELRAG PQ Sbjct: 468 TIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLINERIREELRAGVPPQQ 527 Query: 535 AIAAGFDRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILTSMFSAVFFSRGV 594 AI GF AWATI+DSN+T+LIAG+ALL+FGSG +RGFAVVHCLGILTSM+S+V R + Sbjct: 528 AINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCLGILTSMYSSVVVFRAL 587 Query: 595 VNLWYGRKKRLSGLAIGQIWKPEGDV 620 VNLWYGR+++L ++IG +WKP+ ++ Sbjct: 588 VNLWYGRRRKLQNISIGSVWKPKAEM 613 >NMA0812 [U] COG0342 Preprotein translocase subunit SecD NmA Neisseria meningitidis Z2491 Length = 618 Score = 622 bits (1605), Expect = e-178, Method: Compositional matrix adjust. Identities = 320/626 (51%), Positives = 429/626 (68%), Gaps = 20/626 (3%) Query: 1 MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQG 60 MNRY LWKY LIV + +Y++PN FGE+PAVQ+S+ + + + +VD L+ Sbjct: 2 MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALQNA 61 Query: 61 NLGAESV-AFDNAGSQPSVRARFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTP 119 + + + DN S++ RF T+ Q KA+ ++E L YI A NLL ++P Sbjct: 62 GIQTDGMFVVDN-----SLKVRFKDTETQLKARDVIENTLGEG-----YITALNLLADSP 111 Query: 120 QWLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRSLLRDKNIRHSGINR 179 +W+ + A PM+LGLDLRGGVHF MQVD+KA + K + +R LR + IR + + Sbjct: 112 EWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQ 171 Query: 180 SGDSIEISFRDADTRNKARAALGEL-QEMVLTDAGSGDDLKLIATLRPEALKQTQEDGVK 238 +G+S+ + +DA KA L +L E L GS ++ TL EA+ + + D VK Sbjct: 172 AGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGS----NIVLTLSEEAVNKVRSDAVK 227 Query: 239 QNISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDESV 298 QNI+TL RVNELGVAEP+IQ+ GADRIVV+LPGVQD ++AKDIIGRTATLE+RMV++ Sbjct: 228 QNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDP 287 Query: 299 VRGTEETSA-IPFGSELFKIGKGAP--VVLNKEPVLTGDYISNASASFDENHQPAVSIDL 355 + E +P G EL G P ++++K+ LTGD I++A SFD+ PAVS+ L Sbjct: 288 AKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSFDQMGAPAVSLSL 347 Query: 356 NGDGGRKMREATRDKVGKAMAIVLFEKGKGEVLTVATIRSEL-GSRFQITGMGSPEAASD 414 + GG E T VGK MA+VL ++GK EV+T IR+ + G R +I+G + A+D Sbjct: 348 DSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGRVEISGSMTTAEAND 407 Query: 415 LALLLRAGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYGFLAMAVFMVIYYQLFGFFS 474 +LLLRAGSLAAPM I+EERTIGP LG +NI+KGF S L+GF +A FMV+YY+L GFFS Sbjct: 408 TSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVAAFMVVYYRLMGFFS 467 Query: 475 ALALSVNVLLLVALLSTLQVTLTLPGIAAIALALGMAIDSNVLINERIREELRAGNSPQA 534 +ALS N+L L+ +LS +Q TLTLPG+AA+AL LGMAIDSNVLINERIREELRAG PQ Sbjct: 468 TIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLINERIREELRAGVPPQQ 527 Query: 535 AIAAGFDRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILTSMFSAVFFSRGV 594 AI GF AWATI+DSN+T+LIAG+ALL+FGSG +RGFAVVHCLGILTSM+S+V R + Sbjct: 528 AINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCLGILTSMYSSVVVFRAL 587 Query: 595 VNLWYGRKKRLSGLAIGQIWKPEGDV 620 VNLWYGR+++L ++IG +WKP+ ++ Sbjct: 588 VNLWYGRRRKLQNISIGSVWKPKAEM 613 >YPO3189 [U] COG0342 Preprotein translocase subunit SecD Ype Yersinia pestis Length = 615 Score = 516 bits (1330), Expect = e-146, Method: Compositional matrix adjust. Identities = 275/628 (43%), Positives = 410/628 (65%), Gaps = 32/628 (5%) Query: 1 MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQG 60 +NRY LWKY ++++ + G++Y +PN +GE PAVQI+ A+ E + +V +L++ Sbjct: 2 LNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLV-QVRDVLEKD 60 Query: 61 NLGAESVAFDNAGSQPSVRARFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQ 120 N+ ++S+A +N ++ ARF D+Q +A+ L + L Y++A NL P TP Sbjct: 61 NIASKSIALENG----AILARFRDPDVQLRAREALVEALGDK-----YVIALNLAPATPS 111 Query: 121 WLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRSLLRDKNIRHSGINRS 180 WL L A PM LGLDLRGGVHFLM+VD+ L K + ++R+ LR+KNI ++ + + Sbjct: 112 WLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKL 171 Query: 181 GD-SIEISFRDADTRNKARAALG-ELQEMVLTDAGSGDDLKLIATLRPEALKQTQEDGVK 238 + +E+ FRD RN A + L +++V + GS L A + E L++ +E V+ Sbjct: 172 DNYGVEVRFRDDKARNDAISYLSSRHRDLVFSSNGSN---TLKAVMSDERLREAREYAVQ 228 Query: 239 QNISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDESV 298 QNI+ L RVN+LGVAEPL+QRQG+DRIVVELPG+QD +RAK+I+G TATLE R+V+ +V Sbjct: 229 QNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNV 288 Query: 299 VRGTEETSAIPFGSELFKIGKGAPVVLNKEPVLTGDYISNASASFDENHQPAVSIDLNGD 358 + +P SE+ +G PVVL K +LTGD+I+++++S DE +Q V+I L+ Sbjct: 289 DASVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTSSTDEYNQAQVNISLDSA 348 Query: 359 GGRKMREATRDKVGKAMAIVLFE-KGKG--------------EVLTVATIRSELGSRFQI 403 GG M T+D +GK MA + E K G EV+ VATI+S LG+ F+I Sbjct: 349 GGSTMSNFTKDNIGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVATIQSRLGNSFRI 408 Query: 404 TGMGSPEAASDLALLLRAGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYGFLAMAVFM 463 TG+ +P A L+LLLRAG+L AP+ I+EERTIGP LG+ NI +G ++ L+G +FM Sbjct: 409 TGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFM 468 Query: 464 VIYYQLFGFFSALALSVNVLLLVALLSTLQ-VTLTLPGIAAIALALGMAIDSNVLINERI 522 V+YY+ FG ++ AL N++L+V ++S L TLT+PGIA I L L +A+D+NVLINERI Sbjct: 469 VVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERI 528 Query: 523 REELRAGNSPQAAIAAGFDRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILT 582 +EE R G + Q AI G+ A+++I+D+N+TTLI + L G+G+I+GFA+ +G++T Sbjct: 529 KEEYRNGRTIQQAIHEGYKGAFSSIVDANITTLITAIILYAVGTGSIKGFAITTAIGVVT 588 Query: 583 SMFSAVFFSRGVVNLWYGRKKRLSGLAI 610 SMF+A+ +R +VNL YG KR++ L+I Sbjct: 589 SMFTAIVGTRAIVNLLYG-GKRINKLSI 615 >secD [U] COG0342 Preprotein translocase subunit SecD Eco Escherichia coli K12 Length = 615 Score = 514 bits (1323), Expect = e-145, Method: Compositional matrix adjust. Identities = 277/626 (44%), Positives = 411/626 (65%), Gaps = 33/626 (5%) Query: 1 MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQG 60 +NRY LWKY ++++ ++ G++Y +PN FGE PAVQI+ A+ E + +V + L++ Sbjct: 2 LNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLI-QVQKTLQEE 60 Query: 61 NLGAESVAFDNAGSQPSVRARFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQ 120 + A+SVA + + ++ ARF +TD Q +A+ L + Y+VA NL P TP+ Sbjct: 61 KITAKSVALE----EGAILARFDSTDTQLRAREALMGVMGDK-----YVVALNLAPATPR 111 Query: 121 WLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRSLLRDKNIRHSGINRS 180 WL ++HA PM LGLDLRGGVHFLM+VD+ L K + S+RS LR+K I ++ + + Sbjct: 112 WLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKE 171 Query: 181 GD-SIEISFRDADTRNKARAALGELQ-EMVLTDAGSGDDLKLIATLRPEALKQTQEDGVK 238 + + I+FRDA R++A A L + ++V++ GS +L A + L + +E V+ Sbjct: 172 NNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSN---QLRAVMSDARLSEAREYAVQ 228 Query: 239 QNISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDESV 298 QNI+ L RVN+LGVAEP++QRQGADRIVVELPG+QD +RAK+I+G TATLE R+V+ +V Sbjct: 229 QNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNV 288 Query: 299 VRGTEETSAIPFGSELFKIGKGAPVVLNKEPVLTGDYISNASASFDENHQPAVSIDLNGD 358 + + +P SE+ + +G PVVL K +LTGD+I+++++S DE +QP V+I L+ Sbjct: 289 DQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSA 348 Query: 359 GGRKMREATRDKVGKAMAIVLFE-KGKG--------------EVLTVATIRSELGSRFQI 403 GG M T+D +GK MA + E K G EV+ +A I+S LG+ F+I Sbjct: 349 GGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRI 408 Query: 404 TGMGSPEAASDLALLLRAGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYGFLAMAVFM 463 TG+ +P A L+LLLRAG+L AP+ I+EERTIGP LG NI++G ++ L G L +FM Sbjct: 409 TGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFM 468 Query: 464 VIYYQLFGFFSALALSVNVLLLVALLSTLQ-VTLTLPGIAAIALALGMAIDSNVLINERI 522 +I+Y+ FG + AL N++L+V ++S L TL++PGIA I L L +A+D+NVLINERI Sbjct: 469 IIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERI 528 Query: 523 REELRAGNSPQAAIAAGFDRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILT 582 +EEL G + Q AI G+ A+++I D+N+TTLI + L G+GAI+GFA+ +G+ T Sbjct: 529 KEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVAT 588 Query: 583 SMFSAVFFSRGVVNLWYG--RKKRLS 606 SMF+A+ +R +VNL YG R K+LS Sbjct: 589 SMFTAIVGTRAIVNLLYGGKRVKKLS 614