BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0063.p (227 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr7385 [K] COG1396 Predicted transcriptional regulators Mlo Mes... 118 1e-26 PA4987 [K] COG1396 Predicted transcriptional regulators Pae Pseu... 103 4e-22 TM0656 [K] COG1396 Predicted transcriptional regulators Tma Ther... 100 2e-21 CAC0841 [K] COG1396 Predicted transcriptional regulators Cac Clo... 86 7e-17 PA5301 [K] COG1396 Predicted transcriptional regulators Pae Pseu... 84 4e-16 >mlr7385 [K] COG1396 Predicted transcriptional regulators Mlo Mesorhizobium loti Length = 227 Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 113/206 (54%), Gaps = 9/206 (4%) Query: 22 DAMTQMKIKKKDPAAAPHADVGARLKALRLERGMSVNELAASAGVSVGTVSQVERNKANP 81 D + + K KD A VG R++ALRLER +S+ ELAA AGVS+G +SQ+ER ++ Sbjct: 27 DMLDEAAEKPKDDA---DVRVGRRVRALRLERRLSLAELAAKAGVSIGALSQIERGMSSL 83 Query: 82 SVRILERLRVALSVPLSALLEDA-EATPDYDASDVVRRAKDRPVFDVGSRGMQKELLSPQ 140 V+++ L AL + SAL+ D +A D RA R V S G+ K LLSP Sbjct: 84 RVKVIWPLAAALDIEPSALIADGNDAVNDL----YCVRADKRRSIPVKSEGIAKALLSPP 139 Query: 141 GNHDLKMMIILIPPGAGSDEVLIGVGEKAGVVMEGSVVLNLGGSRVELKSGDSFQFASTI 200 G L M++ + G G+ E G + G V+ G V L + ++ LK+GDSF F ST+ Sbjct: 140 GAT-LTGMLVAVEAGGGTAEAYAHAGHEFGYVLAGEVELVVDSTKYGLKTGDSFAFKSTL 198 Query: 201 PHSVHNESAKPARLLWVMNTQPPIVH 226 H+ N A+ ++LWV T+P V Sbjct: 199 LHAFRNPGAEQCQILWVNTTKPSEVR 224 >PA4987 [K] COG1396 Predicted transcriptional regulators Pae Pseudomonas aeruginosa Length = 199 Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 4/184 (2%) Query: 42 VGARLKALRLERGMSVNELAASAGVSVGTVSQVERNKANPSVRILERLRVALSVPLSALL 101 +G R++ LR RG+++ ELAA + ++ G +SQ+ERN A PS+ L + +L V + Sbjct: 20 LGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPSIPALFNIARSLGVTIQWFF 79 Query: 102 EDAEATPDYDASDVVRRAKDRPVFDVGSRGMQKELLSPQGNHDLKMMIILIPPGAGSDEV 161 A DA VVRR V G+ ELL+PQ + L+++ PPG S + Sbjct: 80 ASEAAVDPADAGYVVRRNTRMSVHY--EDGIIDELLTPQPSRQLEILHSRFPPGTYSQQS 137 Query: 162 LIGVGEKAGVVMEGSVVLNLGGSRVELKSGDSFQFASTIPHSVHNESAKPARLLWVMNTQ 221 GE+AG ++ G L +G +L+ GDSF ++S PH N +LWV+ Sbjct: 138 YSHEGEEAGYILSGIFELWVGDRHFQLREGDSFSYSSQEPHRYGNPGDSDTLVLWVIT-- 195 Query: 222 PPIV 225 PP Sbjct: 196 PPTF 199 >TM0656 [K] COG1396 Predicted transcriptional regulators Tma Thermotoga maritima Length = 176 Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 7/178 (3%) Query: 42 VGARLKALRLERGMSVNELAASAGVSVGTVSQVERNKANPSVRILERLRVALSVPLSALL 101 +G +L+ LRL RG++ ELA +S +SQ+E +K +PS+ LER+ AL L Sbjct: 3 IGEKLRKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 62 Query: 102 EDAEATPDYDASDVVRRAKDRPVFDVGSRGMQKE-LLSPQGNHDLKMMIILIPPGAGSDE 160 D E + V ++ + PV+D G++ E L+S + ++ +++ + PGA ++E Sbjct: 63 SDVE-----EERIVFKKEERVPVYD-EPEGVKSEILMSGVEDKEIDPILVTLEPGAQTEE 116 Query: 161 VLIGVGEKAGVVMEGSVVLNLGGSRVELKSGDSFQFASTIPHSVHNESAKPARLLWVM 218 G + G V++G + L L G R LK GD F + + H V N K A LLW+M Sbjct: 117 ESYHEGSEFGFVIQGRIDLYLDGKRYRLKEGDCFYYKADKKHYVKNPGKKKAVLLWIM 174 >CAC0841 [K] COG1396 Predicted transcriptional regulators Cac Clostridium acetobutylicum Length = 179 Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 15/187 (8%) Query: 41 DVGARLKALRLERGMSVNELAASAGVSVGTVSQVERNKANPSVRILERLRVALSVPLSAL 100 D+G ++K LR+E+ ++ ELA +S G +SQ+ERN +PS+ L + AL L Sbjct: 2 DIGEKIKRLRIEKQLTQEELANRCELSKGFISQIERNLTSPSIATLTDILDALGTNLPDF 61 Query: 101 L-EDAEATPDYDASDVVRRAKDRPVFDVGS--RGMQKELLSPQGNHDLKMMIILIPPGAG 157 ED + + D+ + + +++ QK+ + P +M+ L G+ Sbjct: 62 FKEDNQEKIVFKKDDMCETSDEELKYNLKWLVSNSQKDSMEP-------VMLTLYENGSY 114 Query: 158 -SDEVLIGVGEKAGVVMEGSVVLNLGGSRVELKSGDSFQFASTIPHSVHNESAKPARLLW 216 DE GE+ G V++G++ L LG + ++KSG+SF F + H + N K A ++W Sbjct: 115 LEDEP--HEGEEFGYVLKGTIYLKLGNKKFKVKSGESFYFKPNVNHQISNAGKKTASIIW 172 Query: 217 VMNTQPP 223 + + PP Sbjct: 173 I--STPP 177 >PA5301 [K] COG1396 Predicted transcriptional regulators Pae Pseudomonas aeruginosa Length = 182 Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 101/180 (56%), Gaps = 12/180 (6%) Query: 41 DVGARLKALRLERGMSVNELAASAGVSVGTVSQVERNKANPSVRILERLRVALSVPLSAL 100 DVGARL+ +R +G+S ELA AGV+ T+S +E+N +PS+ L+ +V +P+S L Sbjct: 2 DVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLK--KVLGGIPMS-L 58 Query: 101 LEDAEATPDYDA-SDVVRRAKDRPVFDVGSRGMQKELLSPQGNHDLKMMIIL---IPPGA 156 +E + D+ + VV +A + + D+ S + L+ H + + L PPG+ Sbjct: 59 VEFFSLDLEQDSHTQVVYKADE--LIDISSGAVSMRLVGKA--HPSRAIAFLDETYPPGS 114 Query: 157 GS-DEVLIGVGEKAGVVMEGSVVLNLGGSRVELKSGDSFQFASTIPHSVHNESAKPARLL 215 + +E+L GE+AGV+++G + L +G L+ GDS+ F S PH N PARL+ Sbjct: 115 DTGEEMLNHEGEEAGVLVDGRLELTVGSETYVLERGDSYYFESNKPHRFRNPYDVPARLI 174