BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0062.p (269 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3410 [ET] COG0834 ABC-type amino acid transport/signal transd... 200 3e-51 CAC0111_1 [ET] COG0834 ABC-type amino acid transport/signal tran... 94 3e-19 AF0231 [ET] COG0834 ABC-type amino acid transport/signal transdu... 92 1e-18 L165_1 [ET] COG0834 ABC-type amino acid transport/signal transdu... 90 5e-18 lin0840_1 [ET] COG0834 ABC-type amino acid transport/signal tran... 88 2e-17 >RSc3410 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 255 Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 103/244 (42%), Positives = 147/244 (60%), Gaps = 1/244 (0%) Query: 23 SGLATCLM-LVTMTQAQAAGPAKVSAGTTPSSVPNAFLNIKTQQIEGVMPDVIREIGKRE 81 + L C++ ++ AQ G + G T + VP FL++K+ I+G+M D + +GK Sbjct: 10 AALVLCMLGSASLAWAQGGGAPTYNVGATATGVPFTFLDVKSNSIQGMMVDTVTAVGKAG 69 Query: 82 GFEISFDIVPFSALVQSVVSDKIDLIVAGMSPTPKRKEVVDFSEPVAEFGKGIIVSASDK 141 GF ++ F+AL+ S+ S KID+I A M TP R +VVDFS+PV +G+G+ V A D Sbjct: 70 GFSVNVQQTVFAALIPSLTSSKIDIISAAMLKTPARAQVVDFSDPVYSYGEGLRVKADDA 129 Query: 142 KQYRTIQDLAGTVIGAGAGEETSEELMKLGIFKEVKLYNTAADMARDVALGRITAGFNDY 201 K Y ++ DL G V+GA G + L K GIFKEV+ Y++ ADM RD+ALGRI AG D Sbjct: 130 KTYASLDDLKGEVVGAQVGTVFLDMLNKKGIFKEVRSYDSVADMTRDLALGRIKAGLGDQ 189 Query: 202 PIWKAQEANGALQGCRVVDGFKPLRKVPIAFGVKKGNTALLTKINDGLVKIKADGTLDQI 261 PI Q QG ++V +KP+ + V+KG+ LL +IN + KIKADGTL I Sbjct: 190 PILAYQIRQNTFQGVKLVSSYKPVNVGDVCLVVRKGDAELLGRINKAIAKIKADGTLAAI 249 Query: 262 LKKW 265 ++KW Sbjct: 250 VQKW 253 >CAC0111_1 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Cac Clostridium acetobutylicum Length = 263 Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 15/207 (7%) Query: 67 EGVMPDVIREIGKREGFEISFDIVPFSALVQSVVSDKIDLIVAGMSPTPKRKEVVDFSEP 126 +G+ D++ I K+E F + F+ ++ ++ S+++D V+GMS +RK+ +DFS Sbjct: 48 QGIDIDILSAIAKKENFTYDLKPMNFNGIIPALQSNQVDGSVSGMSINDERKKTLDFSNS 107 Query: 127 VAEFGKGIIVSASDKKQYRTIQDLAGT-------VIGAGAGEETSEELMKLGIFKEVKLY 179 + G +V+ SD K +TI D+ G GA E E K G+ +K + Sbjct: 108 YYDSGL-CVVAKSDNKSVKTINDIKGKTAALKKGTAGAAYAEANKE---KYGL--TLKYF 161 Query: 180 NTAADMARDVALGRITAGFNDYPIWKAQEANGALQGCRVVDGFKPLRKVPIAFGVKKG-N 238 + + M + V G DYP+ + + G ++V G + + P F VKKG N Sbjct: 162 DDSPSMFQAVMNGNADITLEDYPVIAYKISIDKNSGLKIV-GDEKITTSPYGFAVKKGTN 220 Query: 239 TALLTKINDGLVKIKADGTLDQILKKW 265 LL K NDGL KIKADG D+I+ K+ Sbjct: 221 KELLKKFNDGLKKIKADGEYDKIISKY 247 >AF0231 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Afu Archaeoglobus fulgidus Length = 264 Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 9/235 (3%) Query: 36 QAQAAGPAKVSAGTTPSSVPNAFLNIKTQQIEGVMPDVIREIGKREGFEISFDIVPFSAL 95 Q + P ++ G+ + P F + KT + G D+++EI KR G E F + + Sbjct: 31 QIKLVEPGYLTVGSDIAYPPFEFTDEKTGEYAGFDIDLMKEIAKRMGLEAKFVNTAWDGI 90 Query: 96 VQSVVSDKIDLIVAGMSPTPKRKEVVDFSEPVAEFGKGIIVSASDKKQYRTIQDLAGTVI 155 + +++ K D+I + M+ T +R + VDFS+P E K +I++ +D+ + ++DL G V+ Sbjct: 91 IPGLLAHKYDVICSAMTITEERAKQVDFSDPYFE-AKQVIITRADETDIQDVEDLNGKVV 149 Query: 156 GAGAGEETSEELMKL----GIFKEVKLYNTAADMARDVALGRITAG-FNDYPIWKAQEAN 210 G +L GI E+K + + V G A +++ + A + N Sbjct: 150 AVQQGTTGDFAAQRLKDEKGIQLEIKRFEGTPEALMAVQKGDADAAIIDNFVAYIAAKEN 209 Query: 211 GALQGCRVVDGFKPLRKVPIAFGVKKGNTALLTKINDGLVKIKADGTLDQILKKW 265 L D F P V K N ALL KIN+ L +IK DGT D+I KW Sbjct: 210 PGLYRIVESDEFAPEY---YGIAVNKDNPALLEKINEVLKEIKEDGTYDKIYNKW 261 >L165_1 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Lla Lactococcus lactis Length = 509 Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 15/239 (6%) Query: 34 MTQAQAAGPAK--VSAGTTPSSVPNAFLNIKTQQIEGVMPDVIREIGKREGFEISFDIVP 91 +T + A P K + + S P F N +Q G+ D++ I K +GF++ ++ + Sbjct: 249 ITATKKATPKKDVYTIASDNSFAPFEFQN-DDKQFTGIDVDLLNAIAKNQGFKLKWNFIG 307 Query: 92 FSALVQSVVSDKIDLIVAGMSPTPKRKEVVDFSEPVAEFGKGIIVSASDKKQYRTIQDLA 151 F A V SV S D +++GMS T RK+V D+ P I S++D ++ +DL Sbjct: 308 FQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTD-DSIKSWKDLK 366 Query: 152 GTVIGAGAGEETSEELMKLGIFKE----VKLYNTAADMARDVALGRITAGFNDYPIWKAQ 207 G +GA G + + L KE VK + A M + G I A +D P+ K Sbjct: 367 GKTLGAKNGTASFDYLNAHA--KEYGYTVKTFTDATTMYSSLNNGSINALMDDEPVIKY- 423 Query: 208 EANGALQGCRVVDGFKPLRKVPIAFGVKKG-NTALLTKINDGLVKIKADGTLDQILKKW 265 QG + KP+ F VKKG N L+ N+GL ++A+G D+I+ K+ Sbjct: 424 ---AIKQGQKFATPIKPIPDGQYGFAVKKGSNPELIEMFNNGLANLRANGEYDKIIDKY 479 Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 21/252 (8%) Query: 25 LATCLMLVTMTQAQAAGPAK----VSAGTTPSSVPNAFLNIKTQQIEGVMPDVIREIGKR 80 A +ML T+T A K V + S P F N + + + G+ D+++E+ K Sbjct: 6 FALAMMLATVTAFLVAPSVKAETTVKIASDSSYAPFEFQNGQKKWV-GIDVDIMQEVAKI 64 Query: 81 EGFEISFDIVPFSALVQSVVSDKIDLIVAGMSPTPKRKEVVDFSEPVAEFGKGIIVSASD 140 +++ F A +Q++ + ++D I+AGM+ T +RKE DFS P + + ++ + Sbjct: 65 NDWKLEMSYPGFDAALQNLKAGQVDGIIAGMTITDERKETFDFSNPY--YTSALTIATTK 122 Query: 141 KKQYRTIQDLAGTVIGA--GAGEET--SEELMKLGIFKEVKLYNTAADMARDVALGRITA 196 + DL G +GA G +T E K G +K Y+ M ++ G I Sbjct: 123 DSKLSDYSDLKGKAVGAKNGTAAQTWLQENQKKYGY--TIKTYSDGVHMFAALSSGNIAG 180 Query: 197 GFNDYPIWKAQEANGALQGCRVVDGFKPLRKVP--IAFGVKKG-NTALLTKINDGLVKIK 253 ++ P+ + QG + F P +P F V KG N+ L+ N L ++K Sbjct: 181 AMDEVPV----ISYAMKQGQDLAMNF-PSISLPGGYGFAVMKGKNSTLVDGFNKALAEMK 235 Query: 254 ADGTLDQILKKW 265 ++G D+ILKK+ Sbjct: 236 SNGDYDKILKKY 247 >lin0840_1 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Lin Listeria innocua Length = 268 Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 16/224 (7%) Query: 48 GTTPSSVPNAFLNIKTQQIEGVMPDVIREIGKREGFEISFDIVPFSALVQSVVSDKIDLI 107 GT + P F K + G+ D+++ I K + F+ + F+A VQ++ ++++D + Sbjct: 38 GTDTTFAPFEFE--KDGKHVGIDMDILKAIAKDQNFKYEIKAMGFNAAVQALEANQVDGV 95 Query: 108 VAGMSPTPKRKEVVDFSEPVAEFGKGIIVS-ASDKKQYRTIQDLAGTVIGAGAGEE--TS 164 +AGMS T +RK+ DFS+P F G+++ D + + DL G + G E Sbjct: 96 IAGMSITDERKQKFDFSDPY--FDSGVVMGILKDNDEIKNYDDLKGKKVAVKTGTEGYAF 153 Query: 165 EELMKLGIFKEVKLYNTAADMARDVALGRITAGFNDYPI--WKAQEANGALQGCRVVDGF 222 E +K ++ +++ +A M DV A F+DYP+ + Q N G ++V Sbjct: 154 AEKIKDKYGFDIVVFDDSAQMYDDVKTRNSVACFDDYPVLAYGVQTGN----GLKIVT-- 207 Query: 223 KPLRKVPIAFGVKKG-NTALLTKINDGLVKIKADGTLDQILKKW 265 + + F V KG N LL K N GLV IKA G D+IL+ + Sbjct: 208 EKEKGNSYGFAVNKGQNQELLKKFNAGLVNIKASGEYDKILETY 251