BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0057.p (446 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1229 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 437 e-122 RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 392 e-109 RSc3307 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 386 e-107 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 262 1e-69 STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 248 2e-65 >YPO1229 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 595 Score = 437 bits (1124), Expect = e-122, Method: Compositional matrix adjust. Identities = 250/445 (56%), Positives = 324/445 (72%), Gaps = 3/445 (0%) Query: 1 VMREGKLKAVLVGDVALDSVVETIKAIHPTPESFGMLIDKNGRIIAHPNAELRFKQATDI 60 ++++G LK V+ DV + SV+ + AIHPT SFGMLI +G IIAHP L K DI Sbjct: 154 IVQDGVLKGVIAADVTMGSVIANVNAIHPTDNSFGMLIGADGTIIAHPETLLTLKPLADI 213 Query: 61 APEFAQLSSAADDRASAPMKIVVDGRAKLVRAQKIRGTDWSIVIAIDESEAMAGARSLLN 120 AP L+ A+ P+ + G +KL+ AQ + GT W V+A+D+S+A AG SLL Sbjct: 214 APN---LNLQTLLTATVPVSTDISGSSKLLLAQAVPGTQWFTVVALDKSQATAGIHSLLT 270 Query: 121 TSLLSLILIVGIASVIGVAVTATAFRRLGQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVI 180 TSL++L++I+ I++ + +T A L + QAM AI SGS DLTQRLP +G+DEVA I Sbjct: 271 TSLVTLVIIIFISAGVIALITQRALTPLTHIQQAMDAISSGSADLTQRLPIEGRDEVAQI 330 Query: 181 SRSFNQFVGQLQNVMLDIRDASEAVRTASNEIATANQDLSTRTESAAASLEQTAASMAEI 240 +RSFNQF +L VM IR SE+VR A+NEIA NQDLS RTESAAASL+QT+A++ +I Sbjct: 331 ARSFNQFADKLSLVMAQIRGTSESVRVAANEIAAGNQDLSGRTESAAASLQQTSAALEQI 390 Query: 241 SETVGRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSGQIGAIITVIDGIA 300 S TV +S +AA+QA+ SA+E AS+GG V++ +TT+ IEK SG+IG I +VIDGIA Sbjct: 391 SATVAQSASAARQANNAVFSASEDASRGGDVITKVITTMESIEKASGKIGDITSVIDGIA 450 Query: 301 FQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGS 360 FQTNILALNAAVEAARAGEQGRGFAVVA EVR LA+RSA+AA+E+K L+E+TVS V++GS Sbjct: 451 FQTNILALNAAVEAARAGEQGRGFAVVAGEVRILAQRSAQAAKEIKALIESTVSSVASGS 510 Query: 361 VQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVE 420 QVRQA M +IV+ +DV +++S I A DEQMRGI E+N AV QLD+MVQQNAALV+ Sbjct: 511 SQVRQASNAMTDIVSSVSDVTTIMSEITNAADEQMRGIHEINSAVAQLDTMVQQNAALVQ 570 Query: 421 QSAAASATLQAQANTLASTIGRFRI 445 +S AASA LQAQA L T+ +F+I Sbjct: 571 ESTAASAALQAQAADLTDTVNQFKI 595 >RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 617 Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust. Identities = 227/446 (50%), Positives = 318/446 (71%) Query: 1 VMREGKLKAVLVGDVALDSVVETIKAIHPTPESFGMLIDKNGRIIAHPNAELRFKQATDI 60 ++R+G LK V+ DV++D+V+ +KAIHPTP SFG L++ G+I+AHP+ + K TD+ Sbjct: 171 ILRDGGLKGVVASDVSMDAVIANVKAIHPTPASFGFLVNAAGKIVAHPDDKFTLKPVTDL 230 Query: 61 APEFAQLSSAADDRASAPMKIVVDGRAKLVRAQKIRGTDWSIVIAIDESEAMAGARSLLN 120 + + + + AA + P+++ V G AKL+ Q ++GTDW +V+A+D+S+A AG RSL+ Sbjct: 231 SADLSDATLAALAQTDKPLQVNVGGAAKLLHRQGVQGTDWGLVVALDKSDATAGMRSLVT 290 Query: 121 TSLLSLILIVGIASVIGVAVTATAFRRLGQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVI 180 TS+ L+++ +A+ I A+TA AFRRL + AM IGSGSGDLT+RLP G+DEVA I Sbjct: 291 TSIGVLVVVALVAAAIVGAMTARAFRRLSMIRDAMDDIGSGSGDLTKRLPADGQDEVAQI 350 Query: 181 SRSFNQFVGQLQNVMLDIRDASEAVRTASNEIATANQDLSTRTESAAASLEQTAASMAEI 240 +RSFN F +L V+ IR S++VR+A+ EIA N DLS RTE A+SLE+TA+SM E+ Sbjct: 351 ARSFNAFADKLTAVLQQIRLGSDSVRSAAQEIAAGNADLSQRTEEQASSLEETASSMEEL 410 Query: 241 SETVGRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSGQIGAIITVIDGIA 300 + V ++ A+QA + +A+++A++GG VV V T+G I + S +I II VI+ IA Sbjct: 411 TSIVKQNADNARQASSLAVNASDVATRGGSVVGQVVQTMGGINESSKKIADIIGVIESIA 470 Query: 301 FQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGS 360 FQTNILALNAAVEAARAGEQGRGFAVVA EVRSLA+RSA AA+E+K L+ +V RVS G+ Sbjct: 471 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKALIHDSVDRVSNGT 530 Query: 361 VQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVE 420 V QAG TM EIV V ++ I+ A++EQ GI++VN+AV Q+D + QQNAALVE Sbjct: 531 ALVDQAGVTMAEIVEAVKRVTDIMGEISAASEEQSSGIEQVNQAVNQMDQVTQQNAALVE 590 Query: 421 QSAAASATLQAQANTLASTIGRFRIS 446 Q+AAA+ +L+ QA L +G FR+S Sbjct: 591 QAAAAAESLEEQARNLNDAVGSFRLS 616 >RSc3307 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 646 Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust. Identities = 214/445 (48%), Positives = 304/445 (68%) Query: 1 VMREGKLKAVLVGDVALDSVVETIKAIHPTPESFGMLIDKNGRIIAHPNAELRFKQATDI 60 +MR G L G V LD V E + A+HPTP S ++ ++G++IAHP+A+L K T++ Sbjct: 199 LMRNGAATGALSGAVPLDGVREVVAAVHPTPSSLAFVVARDGQVIAHPDAKLMLKPVTEV 258 Query: 61 APEFAQLSSAADDRASAPMKIVVDGRAKLVRAQKIRGTDWSIVIAIDESEAMAGARSLLN 120 + + + +A+AP+++ + G AKL++AQ ++GTDW +VIA+D++EA AG RS+ Sbjct: 259 SAALTPDALTSLAKATAPLEVELAGAAKLLKAQAVQGTDWYLVIALDKAEATAGLRSVAR 318 Query: 121 TSLLSLILIVGIASVIGVAVTATAFRRLGQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVI 180 ++++L+ A I TA +FRRL QV AM IGSG GDLT RLP G DEVA I Sbjct: 319 ALGVAMVLLTLAAVGIAAFFTAQSFRRLSQVRDAMDTIGSGGGDLTHRLPVVGNDEVAQI 378 Query: 181 SRSFNQFVGQLQNVMLDIRDASEAVRTASNEIATANQDLSTRTESAAASLEQTAASMAEI 240 S SFN F+ ++ V+L++R + E +++A+ EI N+DLS RTE++A++L++T+A++ E+ Sbjct: 379 SASFNTFIDKIGEVLLEVRASVENMKSATGEIEMGNRDLSLRTETSASNLQETSAALTEL 438 Query: 241 SETVGRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSGQIGAIITVIDGIA 300 + +V S AA QA + + A+E A +GG+VVS AV+T+ I + S +I II VID IA Sbjct: 439 TTSVKNSAEAAVQATRLAGEASEAAVRGGEVVSGAVSTMDAIAQSSSRISEIIGVIDSIA 498 Query: 301 FQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGS 360 FQTNILALNAAVEAARAGE GRGFAVVA EVR+LA+RSA AARE+K L++ + + V AG+ Sbjct: 499 FQTNILALNAAVEAARAGENGRGFAVVAGEVRTLAQRSAAAAREIKALIQASEASVKAGA 558 Query: 361 VQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVE 420 +V AG TM EIV V +I I A EQ GI +++R+V ++D QQNAALVE Sbjct: 559 ERVDAAGATMREIVEGIQRVSRIIGEIDGAMHEQSAGISQIDRSVAEMDQATQQNAALVE 618 Query: 421 QSAAASATLQAQANTLASTIGRFRI 445 QS AAS+ L QA+ LA T+G FR+ Sbjct: 619 QSTAASSMLNEQAHGLARTVGLFRL 643 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 262 bits (669), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/285 (51%), Positives = 205/285 (71%) Query: 162 SGDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRTASNEIATANQDLST 221 +GDLTQ + G++EV ++ S +L ++ ++R ++A+ + ++EIA N DLS Sbjct: 234 NGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSA 293 Query: 222 RTESAAASLEQTAASMAEISETVGRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGE 281 RTE AASLE+TAASM +++ TV ++ A+QA Q + SA+E A +GGKVV+D V T+ E Sbjct: 294 RTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVADVVQTMHE 353 Query: 282 IEKVSGQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEA 341 I S +I I +VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA+RSA+A Sbjct: 354 IAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQA 413 Query: 342 AREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEV 401 A+E+K L++ +V+RV GSV V AG TMG+IV V ++ IA A+DEQ RGI ++ Sbjct: 414 AKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQI 473 Query: 402 NRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRIS 446 +AV ++D + QQNA+LVE+SA+A+A+L+ QA+ L + F +S Sbjct: 474 GQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVLS 518 >STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 248 bits (634), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 161/343 (46%), Positives = 228/343 (66%), Gaps = 6/343 (1%) Query: 104 IAIDESEAMAGARSLLNTSLLSLILIVGIASVIGVAVTATA-FRRLGQVSQAMAAIGSGS 162 IA++++ + + S+L +L+V IA G+ ++ A RL + + +A S Sbjct: 180 IAVEDNNSSYNQAMWVLVSVLIAVLVVIIAVWFGIKLSLIAPMNRLIESIRHIA-----S 234 Query: 163 GDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRTASNEIATANQDLSTR 222 GDL +R+ +G +E+ ++ + +L + D+R+ + A+ + ++EIA N DLS+R Sbjct: 235 GDLVKRIDVEGSNEMGQLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSR 294 Query: 223 TESAAASLEQTAASMAEISETVGRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEI 282 TE AASLE+TAASM +++ TV ++ A+QA + SA+E A +GGKVV + V T+ +I Sbjct: 295 TEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDI 354 Query: 283 EKVSGQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAA 342 S +I II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA+RSA+AA Sbjct: 355 ASSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAA 414 Query: 343 REVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVN 402 RE+K L+E +VSRV GS V AG TM EIV V ++ IA A+DEQ RGI +V Sbjct: 415 REIKSLIEDSVSRVDVGSTLVESAGETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVG 474 Query: 403 RAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRI 445 AV ++D + QQNA+LVE+SAAA+A L+ QA+ L + FRI Sbjct: 475 LAVAEMDRVTQQNASLVEESAAAAAALEEQASRLTQAVAVFRI 517