BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0048.p (261 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA810 [K] COG2207 AraC-type DNA-binding domain-containing prot... 228 1e-59 PA1229 [K] COG2207 AraC-type DNA-binding domain-containing prote... 226 5e-59 mll3235 [K] COG2207 AraC-type DNA-binding domain-containing prot... 219 7e-57 yeaM [K] COG2207 AraC-type DNA-binding domain-containing protein... 196 3e-50 ZyeaM [K] COG2207 AraC-type DNA-binding domain-containing protei... 193 3e-49 >AGpA810 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 107/228 (46%), Positives = 152/228 (66%), Gaps = 3/228 (1%) Query: 13 ENARHQHRKAQLIYSVRGVLNCEVEDGVWIVPPQCAVWIPGDLPHAARGAGETECYCLFV 72 E HQHRK QL+ +RG + C V G+W+VPP C VW+PG + H+ + LF+ Sbjct: 41 EAPEHQHRKGQLVMPLRGGVTCRVPSGMWMVPPHCGVWVPGGMLHSNVATANARLFFLFI 100 Query: 73 EPDAAPDLPTTCCTISVSPLLRELLLKVAGFPELYPLGGREERLIATLLDELASAPVEDL 132 EP AA DLP CCT+S+SPL+REL++++A E+ E + LL L+ PVE L Sbjct: 101 EPGAA-DLPNRCCTLSLSPLVRELIIELADQSEVAT--ADSELMTTLLLSALSRMPVEHL 157 Query: 133 HLPMPRDQRLRRLADLLLADPTDKTSKAAWAHHIGMSERSMSRLLQQQVGMSFGRWRRQL 192 HLP+ + RL R+A L DP+D+++ A WA + MSE S++RL+Q Q G++FGRWR+QL Sbjct: 158 HLPLTDEPRLARIASELADDPSDRSTMAQWARRVAMSENSLARLVQHQTGLTFGRWRQQL 217 Query: 193 HVILALQRLTKGDSVQTVALELGYENASGFITMFRKAAGKSPARYLSD 240 +I+A++ L G +VQ V+ +LGYE+ S FITMF+KA G SP+RYL + Sbjct: 218 QLIIAIRSLASGATVQQVSGDLGYESVSAFITMFKKALGTSPSRYLRN 265 >PA1229 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 268 Score = 226 bits (575), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 158/240 (65%), Gaps = 1/240 (0%) Query: 1 VALGTTSVAKDWENARHQHRKAQLIYSVRGVLNCEVEDGVWIVPPQCAVWIPGDLPHAAR 60 +AL + D E H+HRK QL+ + RG + C V DG+W+VP VWIPG + H+ R Sbjct: 23 LALQLEARHNDTEVPVHRHRKGQLVVACRGGITCTVPDGLWMVPAGFGVWIPGGIAHSNR 82 Query: 61 GAGETECYCLFVEPDAAPDLPTTCCTISVSPLLRELLLKVAGFPELYPLGGREERLIATL 120 + LFVEP AA LP+ CCT+++SPL+ EL+L ++ P+ YP G RL L Sbjct: 83 VTANGKVCFLFVEPGAA-RLPSDCCTLALSPLVLELILHLSAQPQDYPHDGPLARLAGVL 141 Query: 121 LDELASAPVEDLHLPMPRDQRLRRLADLLLADPTDKTSKAAWAHHIGMSERSMSRLLQQQ 180 L+ L AP E L+LP+P ++ LRR+AD L P D+ S A WA + MSERS++R+++++ Sbjct: 142 LELLEQAPTEQLYLPLPDNRGLRRIADELTRAPGDRASMAEWARRVAMSERSLARMVRRE 201 Query: 181 VGMSFGRWRRQLHVILALQRLTKGDSVQTVALELGYENASGFITMFRKAAGKSPARYLSD 240 GM+FG+WR+QL +I+ALQ+L+ G SVQ A LGYE+ S FI MFRKA G PARY+ D Sbjct: 202 TGMTFGQWRQQLQIIIALQQLSAGVSVQRTAEILGYESVSSFIGMFRKALGSPPARYVRD 261 >mll3235 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 268 Score = 219 bits (557), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 101/227 (44%), Positives = 155/227 (68%), Gaps = 4/227 (1%) Query: 13 ENARHQHRKAQLIYSVRGVLNCEVEDGVWIVPPQCAVWIPGDLPHAARGAGETECYCLFV 72 E ++H HRK QL++++ G + C V G+W+VPP C VW+P + H+ + +++ Sbjct: 34 EVSQHWHRKGQLVFALSGSVTCRVPSGLWMVPPHCGVWVPSRMQHSNIATANARIFFVYI 93 Query: 73 EPDAAPDLPTTCCTISVSPLLRELLLKVAGFPELYPLGGREERLIATLLDELASAPVEDL 132 EP AA +LP CCT+S+SPLLREL+++++ + P R L + LL EL PV+ L Sbjct: 94 EPGAA-ELPDRCCTLSISPLLRELIIELS---DCAPDDARCAFLGSVLLAELPDMPVQQL 149 Query: 133 HLPMPRDQRLRRLADLLLADPTDKTSKAAWAHHIGMSERSMSRLLQQQVGMSFGRWRRQL 192 HLP+ + RL+R+A+ L DP D+++ A W + +SE S++RL+ ++ G+SFGRWR+QL Sbjct: 150 HLPISSEPRLKRIAEALANDPADRSTLAEWGKRVALSESSLARLVVKETGLSFGRWRQQL 209 Query: 193 HVILALQRLTKGDSVQTVALELGYENASGFITMFRKAAGKSPARYLS 239 H+I+A++ L G SVQ V+ +LGYE+ + FITMF+KA GK PA+YLS Sbjct: 210 HLIVAIRELASGASVQRVSGDLGYESVTAFITMFKKALGKPPAQYLS 256 >yeaM [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco Escherichia coli K12 Length = 273 Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 100/235 (42%), Positives = 148/235 (62%), Gaps = 1/235 (0%) Query: 17 HQHRKAQLIYSVRGVLNCEVEDGVWIVPPQCAVWIPGDLPHAARGAGETECYCLFVEPDA 76 HQHRK QLI ++ G + C VE+ +W+VPPQ AVWIPG + H+ + E LF+EP A Sbjct: 36 HQHRKGQLILALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSA 95 Query: 77 APDLPTTCCTISVSPLLRELLLKVAGFPELYPLGGREERLIATLLDELASAPVEDLHLPM 136 +PTTCCT+ +SPL REL+L +A RLI L DEL P + LHLP+ Sbjct: 96 V-TMPTTCCTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPV 154 Query: 137 PRDQRLRRLADLLLADPTDKTSKAAWAHHIGMSERSMSRLLQQQVGMSFGRWRRQLHVIL 196 ++R + +++ P + + WA MSER+++RL+ ++ G+SF +WR+QL +I+ Sbjct: 155 SSHPKIRTMVEMMAKGPVEWGALGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIM 214 Query: 197 ALQRLTKGDSVQTVALELGYENASGFITMFRKAAGKSPARYLSDRTDSAVRATVP 251 ALQ L KGD+VQ VA LGY++ + FITMF+K G++P RY++ T + ++ P Sbjct: 215 ALQGLVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQTPGRYIARLTTVSPQSAKP 269 >ZyeaM [K] COG2207 AraC-type DNA-binding domain-containing proteins EcZ Escherichia coli O157:H7 EDL933 Length = 273 Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 148/235 (62%), Gaps = 1/235 (0%) Query: 17 HQHRKAQLIYSVRGVLNCEVEDGVWIVPPQCAVWIPGDLPHAARGAGETECYCLFVEPDA 76 HQHRK QLI ++ G + C VE+ +W+VPPQ AVWIPG + H+ + E LF+EP A Sbjct: 36 HQHRKGQLILALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSA 95 Query: 77 APDLPTTCCTISVSPLLRELLLKVAGFPELYPLGGREERLIATLLDELASAPVEDLHLPM 136 +PTTC T+ +SPL REL+L +A RLI L DEL P + LHLP+ Sbjct: 96 V-TMPTTCYTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPV 154 Query: 137 PRDQRLRRLADLLLADPTDKTSKAAWAHHIGMSERSMSRLLQQQVGMSFGRWRRQLHVIL 196 ++R + +++ +P + + WA MSER+++RL+ ++ G+SF +WR+QL +I+ Sbjct: 155 SSHPKIRAMVEMMAKEPVEWGALGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIM 214 Query: 197 ALQRLTKGDSVQTVALELGYENASGFITMFRKAAGKSPARYLSDRTDSAVRATVP 251 ALQ L KGD+VQ VA LGY++ + FITMF+K G++P RY++ T + ++ P Sbjct: 215 ALQGLVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQTPGRYIAGLTTVSPQSAKP 269