BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0034.p         (231 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1866 [KL] COG1199 Rad3-related DNA helicases Pae Pseudomonas a...   300   1e-81
lin0195 [KL] COG1199 Rad3-related DNA helicases Lin Listeria inn...   163   3e-40
CAC1672 [KL] COG1199 Rad3-related DNA helicases Cac Clostridium ...   138   8e-33
PAB2385 [KL] COG1199 Rad3-related DNA helicases Pab Pyrococcus a...    69   9e-12

>PA1866 [KL] COG1199 Rad3-related DNA helicases Pae Pseudomonas aeruginosa
          Length = 758

 Score =  300 bits (769), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 141/226 (62%), Positives = 179/226 (79%)

Query: 2   LCIRNVVPAPFLGPRFAFAHATTLFSATLAPWNYFADLLGMPANTAWIDVESPFQASQLQ 61
           LC+RNVVPA FL  RFA + +T LFSATL P +Y+ADLLG+PA T W++V+SPF A QL+
Sbjct: 507 LCLRNVVPAAFLAERFAASRSTVLFSATLGPRDYYADLLGLPAGTPWLEVDSPFSAEQLE 566

Query: 62  VKVAHQISTTWQRRAASIAPICELMARQYEERPGNYLAFFSSFDYLQQARDAFARAHPHI 121
           V +  ++ST + +R AS+API  ++  Q+ +RPGNYLAFFSSFDYLQQA D F +A+P +
Sbjct: 567 VHIQRRVSTRYAQRQASLAPIAAILGEQFRQRPGNYLAFFSSFDYLQQALDVFRQAYPWV 626

Query: 122 ATWQQSRRMSETDRDAFLARFESAGQGIGFAVLGGSFGEGVDLPGDRLIGAFVATLGLPQ 181
             W Q+ RM E +R  FL RF + G+GIGFAVLGG+FGEG+DLPG+RLIGAF+ATLGLPQ
Sbjct: 627 PCWSQTPRMDEAERRVFLERFVAGGEGIGFAVLGGAFGEGIDLPGERLIGAFIATLGLPQ 686

Query: 182 FNPVNEQLRERMEQLFGCGYDYTYLYPGMQKVVQXSLFLLRIRLAR 227
            NPVNEQ+R RM++LFG GYDYTYLYPG+QKVVQ +  ++R R  R
Sbjct: 687 VNPVNEQIRLRMQRLFGDGYDYTYLYPGLQKVVQAAGRVIRSRSDR 732


>lin0195 [KL] COG1199 Rad3-related DNA helicases Lin Listeria innocua
          Length = 779

 Score =  163 bits (412), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/209 (38%), Positives = 123/209 (58%), Gaps = 2/209 (0%)

Query: 9   PAPFLGPRFAFAHATTLFSATLAPWNYFADLLGMPANTAWIDVESPFQASQLQVKVAHQI 68
           PA  L  +     ++ LFSATL P +Y+ +LLG   +T+ +   SPF+ + + + VA  I
Sbjct: 513 PAFLLSEKLKLGASSVLFSATLRPIDYYTNLLGGNNDTSRLTFASPFKQNNMHLMVADYI 572

Query: 69  STTWQRRAASIAPICELMARQYEERPGNYLAFFSSFDYLQQARDAFARAHPHIATWQQSR 128
           ST +QRR  S+  + + +      + GNYL FF SF YL+ A + F+  +P +   +Q  
Sbjct: 573 STKYQRRENSLESVIDALYAMLSGKKGNYLFFFPSFQYLETAFELFSEKYPEVRAQKQQS 632

Query: 129 RMSETDRDAFLARFESAGQG--IGFAVLGGSFGEGVDLPGDRLIGAFVATLGLPQFNPVN 186
            M+E +R+ FLA FE+  +   +GF VLGG F EGVDL G+RLIG  +  +GL Q N  +
Sbjct: 633 FMNEAEREEFLAAFETGREETFVGFCVLGGVFSEGVDLRGERLIGTAIVGVGLAQMNVES 692

Query: 187 EQLRERMEQLFGCGYDYTYLYPGMQKVVQ 215
           + +++   +  G G+DY Y  PGM KV+Q
Sbjct: 693 DLIKDYYNETIGRGFDYAYQIPGMNKVLQ 721


>CAC1672 [KL] COG1199 Rad3-related DNA helicases Cac Clostridium
           acetobutylicum
          Length = 791

 Score =  138 bits (348), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 74/216 (34%), Positives = 115/216 (53%), Gaps = 3/216 (1%)

Query: 9   PAPFLGPRFAFAHATTLFSATLAPWNYFADLLGMPANTAWIDVESPFQASQLQVKVAHQI 68
           P+ F+        +   FSATL+P NYF ++LG           SPF      + +A  I
Sbjct: 526 PSKFIEETVKKGISAVFFSATLSPMNYFKEILGAEEGDYNATFASPFSEDNRCIFIAKNI 585

Query: 69  STTWQRRAASIAPICELMARQYEERPGNYLAFFSSFDYLQQARDAFARAHPHIATWQQSR 128
           ST + +R  +   + + +     ++ GNY+ FF S+ Y+    D F+    +    Q+S 
Sbjct: 586 STKYAKREQNYDAVVQYIRSFVLQKKGNYMIFFPSYKYMNNIYDRFSAGEDYEVILQKSS 645

Query: 129 RMSETDRDAFLARF--ESAGQGIGFAVLGGSFGEGVDLPGDRLIGAFVATLGLPQFNPVN 186
            M ET+++ FLA F  ES    IGF VLGG F EG+DL G+RLIGA +  +GLP      
Sbjct: 646 -MDETEKNDFLAAFNDESEKGTIGFCVLGGVFSEGIDLKGERLIGAVIVGVGLPMICLER 704

Query: 187 EQLRERMEQLFGCGYDYTYLYPGMQKVVQXSLFLLR 222
           + +++  +     GY+Y+Y+YPGM KV+Q +  ++R
Sbjct: 705 DMIKKYFDNRNNLGYEYSYMYPGMNKVLQAAGRVIR 740


>PAB2385 [KL] COG1199 Rad3-related DNA helicases Pab Pyrococcus abyssi
          Length = 637

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 15/207 (7%)

Query: 20  AHATTLFSATLAPWNYFADLLGMPANTAWIDVESPFQASQLQVKVAHQISTTWQRRAASI 79
            H+  L S TL+P   F D++G+  N          ++    V VA  +ST  + R+  +
Sbjct: 376 VHSAILMSGTLSPLEAFRDIIGV--NARLKKFPRMVKSENAIVLVARDVSTRGEERSPVL 433

Query: 80  -APICELMARQYEERPGNYLAFFSSFDYLQQ--ARDAFARAHPHIA--TWQQSRRMSETD 134
              + E +    +  P N   F +S++ L+   + +   R    I    + + R  S ++
Sbjct: 434 YKKLAEYIFEAVKIIPKNVGVFTASYEVLEGLISTNVHIRIEEEIGKKVFIEKRDASSSE 493

Query: 135 RDAFLARFESAGQGIG---FAVLGGSFGEGVDLPGDRLIGAFVATLGLPQFNP---VNEQ 188
            DA +A F++  +G G   F V+GG   EG D  GD + G  V  +G+P   P   V  Q
Sbjct: 494 NDALVAEFKAEAKGNGGVLFGVMGGRNSEGQDYSGDEMNG--VILVGIPYARPTPRVQAQ 551

Query: 189 LRERMEQLFGCGYDYTYLYPGMQKVVQ 215
           +R   ++  G G  Y YL P  +K+ Q
Sbjct: 552 IRYYEKKFPGKGRYYGYLLPAHRKLAQ 578