BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0014.p (317 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2510 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 267 2e-71 PA3594 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 153 5e-37 PA5029 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 149 6e-36 BS_alsR [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis 147 3e-35 PA5218 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 147 4e-35 >PA2510 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 290 Score = 267 bits (683), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 146/290 (50%), Positives = 199/290 (68%), Gaps = 6/290 (2%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 M++R L+YF A+A T NFTRA+EQLHIAQPPLSRQIQ LEE LGV L+ R RPLRLTEA Sbjct: 1 MELRHLRYFQALARTLNFTRAAEQLHIAQPPLSRQIQQLEEMLGVALLERG-RPLRLTEA 59 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEV 120 GR F+EQ+ +L++LE + ++T++IG QRQ IGFV S LYG LP L+R LR PE+ Sbjct: 60 GRFFHEQSATLLDQLESICDSTRRIGQGQRQWFGIGFVPSALYGVLPELIRHLRGD-PEL 118 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAASHQ 180 ++ LLE+T++QQ ALKSGRID+GFGRIR +D + + VL EE LV A+P PL Q Sbjct: 119 ELGLLEMTTLQQVEALKSGRIDIGFGRIRIDDPAIRQSVLSEEPLVAALPAGHPLLG--Q 176 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGL 240 +SL+ + + ++YP +PRPS+ADH+L+L + E+QTA+GLVAA G Sbjct: 177 PLSLERLSREPFVLYPGQPRPSYADHVLALFATHGLSLRVTQWANEMQTAIGLVAAGLGA 236 Query: 241 CLIPASARL--RNDLHYRLIDDPRATSPIILTHRINDNAWYIEAIKQLVA 288 L+PAS +L R+D+ Y+ + D TSPII++ R D + ++ L+ Sbjct: 237 TLVPASVQLQHRDDVAYQALADASLTSPIIVSRRQGDGSPHLRRCLALIG 286 >PA3594 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 295 Score = 153 bits (387), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 96/269 (35%), Positives = 148/269 (55%), Gaps = 3/269 (1%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 MD+RQL+YF+AVA +F RA+ +L I+QP LS I+ LEE+LG QL+LRN++ ++LT A Sbjct: 1 MDLRQLRYFIAVAEELHFGRAAARLFISQPALSFDIKKLEEQLGTQLLLRNNKSVKLTGA 60 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEV 120 G+V +A +L + E++K TQ L +GFV S LY GLP + + + +P + Sbjct: 61 GQVLLVEARNLLLQAEKVKRLTQLSAEGDVGQLRVGFVNSMLYRGLPRAMSRFEREHPNM 120 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAASHQ 180 ++ L E+ S +Q AL+ G+ID+GF A + L + + +P LA Sbjct: 121 EVVLGEMNSAEQAQALQRGQIDLGFVHWGRLPAEIVSEPLISDPFLCCLPAGHRLAG-QA 179 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGL 240 R+ L E+ + I++P+ P + D I++ D P HE R QT +V G+ Sbjct: 180 RLDLAELRDEDFILFPRHVSPHYHDLIIARCVDAGFSPRIRHEARLWQTVAAMVGLGMGV 239 Query: 241 CLIPASARL--RNDLHYRLIDDPRATSPI 267 LIP + L RN++ Y I+ A S I Sbjct: 240 ALIPETLCLAWRNEVRYLEIEPAGARSEI 268 >PA5029 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 301 Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 155/281 (55%), Gaps = 4/281 (1%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 M++R L+YF+AVA +F RA+E+L I+QPPLS+QIQ LEEE+G +L R +R + LT+A Sbjct: 1 MELRHLRYFIAVAEELHFGRAAERLGISQPPLSQQIQALEEEIGARLFERTNRRVELTDA 60 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLY-GGLPVLVRKLRQHYPE 119 GR+F +++ Q+L ++++ ++ L + L IGF +S + +P + R+ YP+ Sbjct: 61 GRLFLDESRQVLAQVDKAVLLARRAHLGELGELKIGFTSSAPFTSTIPSSIHAFRKAYPD 120 Query: 120 VDIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAA-S 178 V + L E++S Q AL + VG R + V + L E LV + PLAA S Sbjct: 121 VHLDLQEMSSRQVLKALLEESLQVGVIRPLALPDAVHWVELFREPLVAVLRADHPLAAGS 180 Query: 179 HQRVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAES 238 +++ + + + +P+ D +++L P E E T +GLV+A Sbjct: 181 EDGLAIAALAEEPFVFFPRSYGTGLYDQVIALTRQAGFSPRIAQEASEAMTIIGLVSAGL 240 Query: 239 GLCLIPASARLR--NDLHYRLIDDPRATSPIILTHRINDNA 277 G+ ++PAS R + + YR + DP AT+ + L R N+ + Sbjct: 241 GVSILPASFRRTRVDGVVYRTLSDPEATTAVWLVRRQNEGS 281 >BS_alsR [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis Length = 302 Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 148/278 (53%), Gaps = 3/278 (1%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 M++R L+YF+AVA +F +A+ +L++ QPPLS+QI+ LEEE+GV L+ R R + LT A Sbjct: 1 MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKRTKRFVELTAA 60 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEV 120 G +F L ++ Q Q+ ++ L IGFV S Y LP +VR+ R+ +P V Sbjct: 61 GEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGFVGSATYEFLPPIVREYRKKFPSV 120 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAASHQ 180 I+L E++S +Q L G ID+G + + VLA+P PL S + Sbjct: 121 KIELREISSSRQQEELLKGNIDIGILHPPLQHTALHIETAQSSPCVLALPKQHPL-TSKE 179 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGL 240 ++++++ + +I KE P+ + P V E E Q +GLV+A G+ Sbjct: 180 SITIEDLRDEPIITVAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAGIGM 239 Query: 241 CLIPASAR--LRNDLHYRLIDDPRATSPIILTHRINDN 276 +P+SA+ D+ YR +D + + ++ +R +++ Sbjct: 240 TFVPSSAKKLFNLDVTYRKMDQIQLNAEWVIAYRKDNH 277 >PA5218 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 304 Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 163/297 (54%), Gaps = 6/297 (2%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 +D+R+L+ F AVA T +F RA+++LH+AQPPL+RQI LEEELG +L R+SR + LT Sbjct: 2 LDLRRLRCFAAVAETLHFGRAAQRLHMAQPPLTRQISALEEELGFRLFDRSSRAVTLTAE 61 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPV-LVRKLRQHYPE 119 G +F A +L++LE+ +++ L++G+ +S L +R R+ +PE Sbjct: 62 GSLFLPYARALLDQLERTAGFARKLAQGLAGHLTLGYASSIALSDLFTEAIRLFRERHPE 121 Query: 120 VDIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVA--RIVLREEKLVLAIPPSFPLAA 177 V ++LLE S Q+A + G IDVG GR+ + V + L E LV+A+P PL A Sbjct: 122 VQLELLEGASAAQWAQIAEGGIDVGLGRLPPPEGQVGIEVLALGGEPLVVAVPNGDPL-A 180 Query: 178 SHQRVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAE 237 +R+ L ++ + LI++P + + I L + R+I + + LVAA Sbjct: 181 RQERIDLYDLRDRPLILFPLDYGSGLNELIERLYRKAGLALTRGPAGRQITSIIALVAAG 240 Query: 238 SGLCLIP--ASARLRNDLHYRLIDDPRATSPIILTHRINDNAWYIEAIKQLVADMYA 292 G+ L+P ++A R + YR + +P A + ++ R + + +EA ++ + A Sbjct: 241 QGVALVPRCSTALARAGVVYRPLAEPEALADFLVFTRRHGRSAAVEAFLAILGGLDA 297