BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0488.p (381 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1250 [S] COG3299 Uncharacterized homolog of phage Mu protein ... 271 2e-72 HI1520 [S] COG3299 Uncharacterized homolog of phage Mu protein g... 124 3e-28 ECs4987 [S] COG3299 Uncharacterized homolog of phage Mu protein ... 108 2e-23 ymfP [S] COG3299 Uncharacterized homolog of phage Mu protein gp4... 103 7e-22 NMA1323 Non COG 68 4e-11 >YPO1250 [S] COG3299 Uncharacterized homolog of phage Mu protein gp47 Ype Yersinia pestis Length = 378 Score = 271 bits (692), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 164/392 (41%), Positives = 224/392 (57%), Gaps = 25/392 (6%) Query: 1 MAYTRPTLSDLQEQVKADIEAAQPGTDALLRFSPLRILGRVLAALINLVYGYLDYIAKQA 60 M + RPTLS+L+++ ++ I++ LLRFS + ++ A + +L YGYLDYIA+QA Sbjct: 1 MPFNRPTLSELRQRNQSYIQSELKTGGNLLRFSNIGVISDADAGMAHLHYGYLDYIARQA 60 Query: 61 VPWTATDEYLAGWGALKKVYQKAATKSASPTVTFQATSG-TISAGTQLVRGDGVAY---- 115 P+ ATDEYLA WGALK V++KAA + S V F +G I AG L R DG Y Sbjct: 61 TPYNATDEYLAAWGALKDVFRKAANPATSNEVRFSGIAGRVIPAGRLLNRADGYQYQLNK 120 Query: 116 --VTTTSGTSSGTSITVAAEAVD----AGAAGNCDAGTKLTLATAVDGVQSTGVATTAFV 169 + G++ G + +D G GN AGT LTL A+DGVQ+T A T Sbjct: 121 EVIIAEQGSALGEITAILPSPLDDATGGGNRGNSPAGTVLTLDIAIDGVQATATALTKIS 180 Query: 170 GGADVESQDDFSGRVMAGYQSSPQGGSVDDYPTWATAQAGVTRAWANPVGFGAGTVVVYF 229 GGAD+ES+D F R++ YQ+ PQGG+ DY +WA A GVTR W GAGTV VY Sbjct: 181 GGADIESEDAFRSRMLLAYQNVPQGGNDTDYQSWALAVPGVTRCWVKRRLMGAGTVGVYI 240 Query: 230 MMDDVESAHAGFPQGTNGVATAEKRNATKATGDQLILANALYTLRPATALVYACSPEKHI 289 M DD + H GFPQGT+G+++ E+ A KATGDQ +A+A+Y +P ALVY C+P Sbjct: 241 MCDDND--HGGFPQGTDGISSLEEWGAVKATGDQGRVADAIYPQQPIIALVYVCAPVAQA 298 Query: 290 LNFKVSGLSSASTSTRAAISAALADVLYRNGSPLAGTVDRTEIEGALSSIAAAAGGVIDE 349 ++F +SG+S A ++T AAI+ A+ +V + G P G + SS+ A G E Sbjct: 299 IDFVISGISYADSTTTAAINTAIDEVFFTEGQP-GGKI-------LWSSLLLAIG----E 346 Query: 350 IDGVIGSTTTVIPGNVISPLGYLPTLGTVVFL 381 + G G N+ G LP GTV +L Sbjct: 347 VPGSGGFIMASPSANIELQTGKLPVRGTVSYL 378 >HI1520 [S] COG3299 Uncharacterized homolog of phage Mu protein gp47 Hin Haemophilus influenzae Length = 355 Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 149/317 (47%), Gaps = 15/317 (4%) Query: 1 MAYTRPTLSDLQEQVKADIEAAQPGTDALLRFSPLRILGRVLAALINLVYGYLDYIAKQA 60 MA+ PTLS L +Q + + P L R + + ++ R+ AAL + +LD++A+Q Sbjct: 1 MAFNTPTLSTLIKQGEQQFQYRFP---TLKRHNVIGVINRICAALSAGEHMHLDWLARQI 57 Query: 61 VPWTATDEYLAGWGALKKVYQKAATKSASPTVTFQATSGTISAGTQLVRGD-GVAYVTTT 119 +P TA ++YL + K + +K A+ + A TI AGT + G+ ++TT Sbjct: 58 IPTTAEEDYLIEYCLYKGIVRKQASTATGLVTVTAANDTTIPAGTVFEDTNTGLTFITTQ 117 Query: 120 SGTSSGTSITVAAEAVDAGAAGNCDAGTKLTLATAVDGVQSTGVATTAFVGGADVESQDD 179 + +A + G GN AGT L+L +A+ G+ T GGAD+ES Sbjct: 118 ETVVKAGTADIAVKCETTGVEGNLKAGTSLSLTSAILGLLPTATVK-VMSGGADIESLSR 176 Query: 180 FSGRVMAGYQSSPQGGSVDDYPTWATAQAGVTRAWANPVGFGAGTVVVYFMMDDVESAHA 239 R++ Q P GG+ DY WAT GVTRAW +G GTV V F D+ E Sbjct: 177 LLARLIYRVQYPPAGGASHDYIRWATEVPGVTRAWCFERYYGGGTVGVAFACDEREDILP 236 Query: 240 GFPQGTNGVATAEKRNATKATGDQLILANALYTLRPATALVYACSPEKHILNFKVSGLSS 299 P+ V + + + TG + PA +Y +P+ +NFK+ L+ Sbjct: 237 T-PEDIARVRAYIEGHKNEVTGQ--------FEGMPANVELYVFAPQFQAVNFKIR-LAP 286 Query: 300 ASTSTRAAISAALADVL 316 + + R A+ +LA L Sbjct: 287 NTPTLRQAVRKSLAAYL 303 >ECs4987 [S] COG3299 Uncharacterized homolog of phage Mu protein gp47 Ecs Escherichia coli O157:H7 Length = 361 Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 96/324 (29%), Positives = 144/324 (44%), Gaps = 13/324 (4%) Query: 1 MAYTRPTLSDLQEQVKADIEAAQPGTDALLRFSPLRILGRVLAALINLVYGYLDYIAKQA 60 M Y L+ L Q + DI PG+ + + L + LA L + +L +I++Q Sbjct: 2 MPYQPLPLAQLITQTQQDISQRLPGSQPGVNETTLNAIAYALAGLSAQEHEHLAWISRQI 61 Query: 61 VPWTATDEYLAGWGALKKVYQKAATKSASPTVTFQATSGTISAGTQLVRGDGVAYVTTTS 120 +P A + L A V +K A+++ P T I+ G L R DGV Y T S Sbjct: 62 IPTEADEAELLKHCAFWGVIRKPASRADGPVQLMLTTDAGITEGVLLQRSDGVVYRITGS 121 Query: 121 GTSSGTSITVAAEAVDAGAAGNCDAGTKLTLATAVDGV-QSTGVATTAFVGGADVESQDD 179 T ++ V EA AG AGN GT+L+ T G+ Q+ V T GGADVE+ + Sbjct: 122 ATGKAGTLNVNVEAESAGRAGNTPTGTRLSFITPQAGINQTATVTGTGLTGGADVETVPE 181 Query: 180 FSGRVMAGYQSSPQGGSVDDYPTWATAQAGVTRAWANPVGFGAGTVVVYFMMDDVESAHA 239 R++ Q+ P GG+ D+ WA GVTRAW P AG+V V F+ D+ Sbjct: 182 LLSRLVFRVQNPPSGGTQYDFERWAREVPGVTRAWCKPEWPEAGSVGVTFVQDNNPDIFP 241 Query: 240 GFPQG-TNGVATAEKRNATKATGDQLILANALYTLRPATALVYACSPEKHILNFKVSGLS 298 G +G VA + + ATG + +P + + F++ + Sbjct: 242 G--EGDVKRVADYIRSHDDPATGQPV--------GQPLGPTISVFKLTNKPVAFEIR-IV 290 Query: 299 SASTSTRAAISAALADVLYRNGSP 322 + +AA+ AL D+LY P Sbjct: 291 PKTPENQAAVKQALTDLLYNESRP 314 >ymfP [S] COG3299 Uncharacterized homolog of phage Mu protein gp47 Eco Escherichia coli K12 Length = 263 Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 112/237 (47%), Gaps = 21/237 (8%) Query: 101 ISAGTQLVRGDGVAYVTTTSGTSSGTSITVAAEAVDAGAAGNCDAGTKLTLATAVDGVQS 160 ++AG+ + R D V Y TT TSSG + V AGA GN D GT L L T V+G+ S Sbjct: 15 VTAGSVIQRDDLVQYTTTDDATSSGGVLRVPIACSSAGAVGNADDGTALILVTPVNGLPS 74 Query: 161 TGVATTAFVGGADVESQDDFSGRVMAGYQSSPQGGSVDDYPTWATAQAGVTRAWANPVGF 220 +GVA T GG D E + + RV+ Y +PQGG+ DY WA G+TRAW Sbjct: 75 SGVADT-LTGGFDTEELETWRARVIERYYWTPQGGADGDYVVWAKEVPGITRAWTYRHLM 133 Query: 221 GAGTVVVYFMMDDVESAHAGFPQGTNGVATAEKRNATKATGDQLILANALYTLRPATALV 280 G GTV V D+ + P TA +++ + + LY RP Sbjct: 134 GTGTVGVMIASSDLIN-----PIPEESTETAARQHIGPLAP---VAGSDLYVFRPVA--- 182 Query: 281 YACSPEKHILNFKVSGLSSASTSTRAAISAALADVLYRNGSPLAGTVDRTEIEGALS 337 H ++F + ++ + RAAI+A L L R+G P G + + I A+S Sbjct: 183 -------HTVDFHIR-VTPDTPEIRAAITAELRSFLLRDGYP-QGELKVSRISEAIS 230 >NMA1323 Non COG Length = 351 Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 12/227 (5%) Query: 3 YTRPTLSDLQEQVKADIEAAQPGTDALLRFSP---LRILGRVLAALINLVYGYLDYIAKQ 59 + PT ++E++ D ++ P D SP + LA+ Y + +I +Q Sbjct: 2 FETPTFEQIRERILRDTKSLWPDAD----ISPDSDHYVHASRLASCAEGQYAHQSWIVRQ 57 Query: 60 AVPWTATDEYLAGWGALKKVYQKAATKSASPTVTFQATSGT-ISAGTQLVRGDGVAYVTT 118 P TA EYL +++ + ++ T +AS T+T + + +S G Q+ G T Sbjct: 58 IFPDTADREYLERHASMRGLRRRNPT-TASGTLTVSGIAQSMLSDGLQVRIGQRFYRTTA 116 Query: 119 TSGTSSGTSITVAAEAVDAGAAGNCDAGTKLTLATAVDGVQSTGVATTAFVGGADVESQD 178 + SG + + A A + GAA N G + L A GV + T GG D ES Sbjct: 117 RAVIGSGGTAEIPAIADEPGAAANVRDG-EAQLMAAPAGVSTECRLTVQ--GGTDRESDA 173 Query: 179 DFSGRVMAGYQSSPQGGSVDDYPTWATAQAGVTRAWANPVGFGAGTV 225 R++ + P GG+ DY WA + GVT A+ P+ G GTV Sbjct: 174 SLLARLLEIIRRPPAGGNRYDYKNWALSVDGVTSAYVYPLRRGLGTV 220