BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0472.p         (238 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5072 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu...    65   1e-10

>PA5072 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas
           aeruginosa
          Length = 647

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 76/134 (56%)

Query: 73  QLVDKISGEIDHIMIGAAETSFFVDTIKTKISKDVVAADRIAASAEQNAATTEQIAANAE 132
           +LV +IS  +  +   A E S   +  +  ++   V  D++A +  + AAT + +A NAE
Sbjct: 367 ELVGRISDGVSQLASSAEELSAVTEQTRAGVNSQKVETDQVATAMHEMAATVQDVARNAE 426

Query: 133 RASAIAAEVRTESVSGRSEVDRGLQQIGQARTDALSASSMMAQLQEKSRRIHGITEVISE 192
            AS  A +   E+  G + VD+ + +I +  ++   +S  MA+L+ +S +I  + +VI  
Sbjct: 427 LASQAARQADEEARQGDAVVDQAVTRIERLASEMDVSSEAMARLKNESEQIGSVLDVIKS 486

Query: 193 IAARTNLLALNAAI 206
           +A +TNLLALNAAI
Sbjct: 487 VAEQTNLLALNAAI 500