BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0471.p         (328 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4290 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu...   235   1e-61

>PA4290 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas
           aeruginosa
          Length = 538

 Score =  235 bits (599), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 180/318 (56%)

Query: 1   VRQLAQRTKEATDDIGVMVRAITEEAERAATGMNSLSSRVLEAAQNVEKVHGLLNSIERS 60
           VR LA RT EAT+++G MV  I  +       +  LS  + E    VE     L  I   
Sbjct: 219 VRGLAGRTAEATEEVGQMVAEIQRQTSEVVEQIRQLSEELGEGVGQVELTGRQLEGIAEL 278

Query: 61  SSQSQEQIEEIAVASREHVQTTQEIAEAITDIRNGMLQTDHELPRVAASAMVLSERAEAV 120
           ++  + QI EIA  +  +      +  A+  +R  +  ++ +  R+  +A  L  +AE +
Sbjct: 279 AAGVESQITEIAQGAEINRSQLASLFAAVEQVRGDLSASEEQTLRLGEAASQLENQAEVI 338

Query: 121 FEAIIDGGARGGHDDIRVAATGAAQAVGKLFETAIRSGQISEAALFDRTYKPIPNTSPQK 180
            E + +      H  +   A   A A+   FE  +RSG+I    LFDR+Y+P+PNT P K
Sbjct: 339 SERLAEVSLDAYHQSVYDLAREGAAAIAARFEEDVRSGRIDLDDLFDRSYQPLPNTQPTK 398

Query: 181 HSSQFDGFTDRVLPAIQEALLASMPQLAYAGAVDNNGYFPTHNKKFSQPLTGDYDTDLVN 240
           + ++FD +TD+VLP IQE LL     L +A A    GY PTHN+ F+ P +GD  TD + 
Sbjct: 399 YRTRFDSYTDQVLPGIQEQLLERNRNLVFAIACTPEGYVPTHNRAFAHPPSGDPQTDALR 458

Query: 241 NRTKRIFSDRTGKRCGANTRPFLLQTYKRDTGEVMHDLSVPIYVNGKHWGGFRVGYRSSH 300
           +R+KR+F+DRTG RCG++ +P LLQTY RDTGE+MHDLSVPI+V+GKHWGG R+GYR   
Sbjct: 459 SRSKRLFNDRTGIRCGSHQQPLLLQTYTRDTGELMHDLSVPIFVHGKHWGGLRLGYRPEG 518

Query: 301 APASGDAVPAKXRLSETL 318
           A     A P    LS  L
Sbjct: 519 AEPGKAAAPTAQGLSLAL 536