BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0466.p         (266 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1403 [NT] COG2201 Chemotaxis response regulator containing a ...   205   9e-53
ECs2593 [NT] COG2201 Chemotaxis response regulator containing a ...   197   3e-50
cheB [NT] COG2201 Chemotaxis response regulator containing a Che...   196   6e-50
ZcheB [NT] COG2201 Chemotaxis response regulator containing a Ch...   194   2e-49
YPO1679 [NT] COG2201 Chemotaxis response regulator containing a ...   193   3e-49

>RSp1403 [NT] COG2201 Chemotaxis response regulator containing a CheY-like
           receiver domain and a methylesterase domain Rso
           Ralstonia solanacearum
          Length = 381

 Score =  205 bits (521), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 110/119 (92%)

Query: 5   VDDSALIRSVMREIIGNQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRMDGLDFL 64
           +DDSALIRS+++EII  QPDMEVVGVAPDPIIAR+LIKQTNPDVLTLDVEMP+MDGLDFL
Sbjct: 12  IDDSALIRSILKEIINAQPDMEVVGVAPDPIIARDLIKQTNPDVLTLDVEMPKMDGLDFL 71

Query: 65  EKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADMIADKI 123
           EKLMRLRP PVVM+SSLTERGSE TLRALELGA+DFV KPK+ ++ GM EYAD IADKI
Sbjct: 72  EKLMRLRPTPVVMISSLTERGSEATLRALELGAVDFVAKPKLGMRDGMNEYADQIADKI 130


>ECs2593 [NT] COG2201 Chemotaxis response regulator containing a CheY-like
           receiver domain and a methylesterase domain Ecs
           Escherichia coli O157:H7
          Length = 349

 Score =  197 bits (500), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/128 (73%), Positives = 113/128 (88%)

Query: 4   NVDDSALIRSVMREIIGNQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRMDGLDF 63
           +VDDSAL+R +M EII +  DME+V  APDP++AR+LIK+ NPDVLTLDVEMPRMDGLDF
Sbjct: 8   SVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDF 67

Query: 64  LEKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADMIADKI 123
           LEKLMRLRPMPVVMVSSLT +GSE+TLRALELGAIDFVTKP++ I+ GM  Y++MIA+K+
Sbjct: 68  LEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKV 127

Query: 124 RAAAKARV 131
           R AAKA +
Sbjct: 128 RTAAKASL 135


>cheB [NT] COG2201 Chemotaxis response regulator containing a CheY-like
           receiver domain and a methylesterase domain Eco
           Escherichia coli K12
          Length = 349

 Score =  196 bits (497), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 94/128 (73%), Positives = 112/128 (87%)

Query: 4   NVDDSALIRSVMREIIGNQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRMDGLDF 63
           +VDDSAL+R +M EII +  DME+V  APDP++AR+LIK+ NPDVLTLDVEMPRMDGLDF
Sbjct: 8   SVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDF 67

Query: 64  LEKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADMIADKI 123
           LEKLMRLRPMPVVMVSSLT +GSE+TLRALELGAIDFVTKP++ I+ GM  Y +MIA+K+
Sbjct: 68  LEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYNEMIAEKV 127

Query: 124 RAAAKARV 131
           R AAKA +
Sbjct: 128 RTAAKASL 135


>ZcheB [NT] COG2201 Chemotaxis response regulator containing a CheY-like
           receiver domain and a methylesterase domain EcZ
           Escherichia coli O157:H7 EDL933
          Length = 349

 Score =  194 bits (493), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/128 (72%), Positives = 112/128 (87%)

Query: 4   NVDDSALIRSVMREIIGNQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRMDGLDF 63
           +VDDSAL+  +M EII +  DME+V  APDP++AR+LIK+ NPDVLTLDVEMPRMDGLDF
Sbjct: 8   SVDDSALMXQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDF 67

Query: 64  LEKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADMIADKI 123
           LEKLMRLRPMPVVMVSSLT +GSE+TLRALELGAIDFVTKP++ I+ GM  Y++MIA+K+
Sbjct: 68  LEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKV 127

Query: 124 RAAAKARV 131
           R AAKA +
Sbjct: 128 RTAAKASL 135


>YPO1679 [NT] COG2201 Chemotaxis response regulator containing a CheY-like
           receiver domain and a methylesterase domain Ype Yersinia
           pestis
          Length = 349

 Score =  193 bits (491), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 5   VDDSALIRSVMREIIGNQPDMEVVGVAPDPIIARELIKQTNPDVLTLDVEMPRMDGLDFL 64
           VDDSAL+R +M EII + PDME+V  A DP++AR+LIK+ NP VLTLDVEMPRMDGLDFL
Sbjct: 9   VDDSALMRQLMTEIINSHPDMEMVAAAQDPLVARDLIKKFNPQVLTLDVEMPRMDGLDFL 68

Query: 65  EKLMRLRPMPVVMVSSLTERGSEITLRALELGAIDFVTKPKISIQSGMQEYADMIADKIR 124
           EKLMRLRPMPVVMVSSLT + SEIT+RALELGAIDFVTKP++ I+ GM  Y+++IADKIR
Sbjct: 69  EKLMRLRPMPVVMVSSLTGKNSEITMRALELGAIDFVTKPQLGIREGMLAYSELIADKIR 128

Query: 125 AAAKARV 131
            AAKAR+
Sbjct: 129 TAAKARL 135