BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0460.p (496 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1392 [N] COG1419 Flagellar GTP-binding protein Rso Ralstonia ... 328 3e-89 VC2068 [N] COG1419 Flagellar GTP-binding protein Vch Vibrio chol... 247 4e-65 PA1453 [N] COG1419 Flagellar GTP-binding protein Pae Pseudomonas... 209 2e-53 BB0270 Non COG 122 2e-27 Cj0064c [N] COG1419 Flagellar GTP-binding protein Cje Campylobac... 120 7e-27 >RSp1392 [N] COG1419 Flagellar GTP-binding protein Rso Ralstonia solanacearum Length = 615 Score = 328 bits (840), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 157/301 (52%), Positives = 212/301 (70%) Query: 173 DEILSEVMSEIRSMRGVLETQLAEISWGGTQKRDPLKGVVLKEMLAAGFSASLSRLITEN 232 D + ++ EI ++ L ++ ++ G + DP++ + + ML AGFSA L+R + +N Sbjct: 293 DAMTRRMVGEIEVLKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLTRYVLDN 352 Query: 233 LPANSKSQDIMFWVKSVLARNLNTLANENELLENGGVFALVGPTGVGKTTTTAKLAARCV 292 +P + + +V+ L +NL + NEN LL+ GGVFAL+GPTGVGKTTTTAKLAAR V Sbjct: 353 MPQHGTYDSALDFVQRALEKNLTVVPNENSLLDQGGVFALMGPTGVGKTTTTAKLAARFV 412 Query: 293 MRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLID 352 +RHG+ ++AL++TD YRIGG+EQLRIYGKILGV VH+VKD DL +AL +L+ KH VLID Sbjct: 413 LRHGASRVALLSTDSYRIGGHEQLRIYGKILGVTVHAVKDAQDLSLALGDLREKHVVLID 472 Query: 353 TAGVGQRDQMVAEQDAMLAGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKL 412 T G+ QRD+ V+EQ AML G IKRLL LNAT+ G TL+EVV AY + LAGCI+TK+ Sbjct: 473 TIGMSQRDRAVSEQMAMLHAVGPSIKRLLLLNATSNGKTLDEVVSAYRDANLAGCILTKI 532 Query: 413 DEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEG 472 DEAA++G+ +D +IRH+L LHYV+ GQRVPED+ V NK L R F+ E + F Sbjct: 533 DEAASVGHAMDAMIRHRLPLHYVSYGQRVPEDIAVPNKKMLIHRTFRTSAEQSSFALDSD 592 Query: 473 E 473 E Sbjct: 593 E 593 >VC2068 [N] COG1419 Flagellar GTP-binding protein Vch Vibrio cholerae Length = 495 Score = 247 bits (631), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 166/483 (34%), Positives = 257/483 (53%), Gaps = 36/483 (7%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 M +K+F A + A QV+E LG DAVI+SN+ + GVEI+A + D AP A+ Sbjct: 1 MKIKRFFAKDMKTALLQVKEELGVDAVIMSNKKVAGGVEIVAAVDGD----TAPAPAKRY 56 Query: 61 NARPQAASLQ-QQSGAPNAQQAKRPALLSSPLAQQPARAARPENAPLLDQPAHGRAPARP 119 N++P+ Q S AP + +S + R+ A +L Q + A + Sbjct: 57 NSQPRHGYNQVSPSVAPTKSRELADDRVSLQSSADSGRSMTQRFANMLKQ--YSSADEQE 114 Query: 120 VEAAPASDARVWRSRRAEQAAGGRPASAQQAQESGEHDQRPRSAL-------------PE 166 A R++E A R Q++Q S E QRP S L P Sbjct: 115 HRAENEDSLSALLKRQSENRAPQR-NQTQRSQSSSER-QRPDSPLGKLLQEDADARRKPR 172 Query: 167 FDGKDYDEILSE----VMSEIRSMRG-------VLETQLAEISWGGTQKRDPLKGVVLKE 215 D YD + E +SE+ SMR +LE Q++ + W ++R+PL+ +++K Sbjct: 173 LDPTRYDRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEVERREPLRAMLIKR 232 Query: 216 MLAAGFSASLSRLITENLPANSKSQDIMFWVKSVLARNLNTLANENELLENGGVFALVGP 275 + G S ++ + +P + + +++ + + ++++L+ GGV AL+GP Sbjct: 233 LERMGVSLEMADQLACYIPEETPPPKAWKALLGLVSDQIPVV--KHDILKRGGVVALLGP 290 Query: 276 TGVGKTTTTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETD 335 TGVGKTTT AKLAAR M +GS +AL+TTD YRIG +EQL IYG+I+G V KD + Sbjct: 291 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 350 Query: 336 LRIALEELKGKHTVLIDTAGVGQRDQMVAEQ-DAMLAGAGVDIKRLLCLNATATGGTLNE 394 L + +L+ + +L+DTAG+GQRD ++EQ D ++ +G I L L ATA L E Sbjct: 351 LADVIYQLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESGETIHSYLVLPATAQRKVLQE 410 Query: 395 VVHAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLA 454 + + L+GCI+TKLDE ++G + VV+++ L + Y+ANGQRVPED+ +A Y+ Sbjct: 411 TIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPEDIVIAQPKYMV 470 Query: 455 DRA 457 +A Sbjct: 471 AKA 473 >PA1453 [N] COG1419 Flagellar GTP-binding protein Pae Pseudomonas aeruginosa Length = 429 Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 158/474 (33%), Positives = 224/474 (47%), Gaps = 58/474 (12%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 M VK+F A R+A + VR+ LGPDA IL NR + G+E+ A + AP P Sbjct: 1 MQVKRFFAADMRQAMKLVRDELGPDAAILGNRRVAGGIELTAALDYQ-----APPAPSKP 55 Query: 61 NARPQAASLQQQSGAPNAQQAKRPALLSSPLAQQPARAARPENAPLLDQPAHGRAPARPV 120 N PAL L + AR A A ARP Sbjct: 56 N----------------------PAL-EVELRKTQARIAE----------ARAELTARPA 82 Query: 121 EAAPASDARVWRSRRAEQAAGGRPASAQQAQESGEHDQRPRSALPEFDGKDYDEILSEVM 180 E R R AE+ RP A+ + H A P+ G + L + Sbjct: 83 ETQ-----RKDRQLFAEEKPA-RPTLAESM--TAAH------AKPQVGG----QTLEAMR 124 Query: 181 SEIRSMRGVLETQLAEISWGGTQKRDPLKGVVLKEMLAAGFSASLSRLITENLPANSKSQ 240 E+ +R ++E QL I+WG Q + P + + + + G A LS+ + E + A ++ Sbjct: 125 FELNGLRELIEVQLGSIAWGQLQHQRPQQANLWRRLQRMGLPAELSKPLLERVAAVGDTR 184 Query: 241 DIMFWVKSVLARNLNTLANENELLENGGVFALVGPTGVGKTTTTAKLAARCVMRHGSGKL 300 + + L+R + T E + L+ GGV ALVGP G GKTTT AK+AAR V+++G+ L Sbjct: 185 QAWRMLLAHLSRAVQT--PEQDPLDAGGVLALVGPAGAGKTTTLAKMAARYVLKYGAQSL 242 Query: 301 ALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRD 360 AL++ D YRIG EQ++ G+IL V V V L AL L K VLIDTAG+ D Sbjct: 243 ALVSMDSYRIGAQEQIKTLGRILNVPVTLVDPGQSLIQALAPLARKRMVLIDTAGLPASD 302 Query: 361 QMVAEQDAMLAGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGN 420 + Q LA +++K L + T+ L Y GLAGCI+TKLDEA ++G Sbjct: 303 PALRMQLEALASPSLNVKNYLVMATTSQSQVLKSAYQTYRHCGLAGCILTKLDEAGSLGE 362 Query: 421 VLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGEL 474 + + I +L + Y+A+G R+P+DL VA L RA + P E E+ Sbjct: 363 SMALAIAQRLPVAYLADGPRIPDDLQVARSHQLVSRAVSLQAPEEPSEDAMAEM 416 >BB0270 Non COG Length = 388 Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/191 (37%), Positives = 106/191 (55%), Gaps = 3/191 (1%) Query: 269 VFALVGPTGVGKTTTTAKLAARCVMRHGSGKL--ALITTDGYRIGGYEQLRIYGKILGVM 326 VF LVGPTGVGKTTT AKLAA + S L +IT D YRIG +Q++ YG I+G+ Sbjct: 176 VFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP 235 Query: 327 VHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQM-VAEQDAMLAGAGVDIKRLLCLNA 385 V +++ DL+ + + K +L+DT G +D M +AE +L G D + L +++ Sbjct: 236 VRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSS 295 Query: 386 TATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDL 445 T + E+ H +S I TK+DE +GN++ ++ K + YV +GQ VP ++ Sbjct: 296 TTKTSDVKEIFHQFSPFNYKTVIFTKVDETTCVGNLISLIYEMKKVVSYVTDGQIVPHNI 355 Query: 446 HVANKLYLADR 456 VA L R Sbjct: 356 SVAEPLTFIRR 366 >Cj0064c [N] COG1419 Flagellar GTP-binding protein Cje Campylobacter jejuni Length = 484 Score = 120 bits (301), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 121/242 (50%), Gaps = 6/242 (2%) Query: 216 MLAAGFSASLSRLITENLPANSKSQD--IMFWVKSVLARNLNTLANENELLENGGVFALV 273 ML A + I EN+PA K+ + + S+L RN+ E+++ + + LV Sbjct: 232 MLENHLEAIMKATI-ENMPAAMKTNKDAVQRYFHSLL-RNILPCRVESDI-KKQKIMMLV 288 Query: 274 GPTGVGKTTTTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDE 333 GPTGVGKTTT AKLA R K +IT D YRIG EQL Y K++ + + + Sbjct: 289 GPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIIDSIEP 348 Query: 334 TDLRIALEELKGKHTVLIDTAGVGQRDQ-MVAEQDAMLAGAGVDIKRLLCLNATATGGTL 392 DL A++ L +L+DT G Q DQ +A+ L + +I L ++A L Sbjct: 349 KDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAEIDVNLVVSANTKHEDL 408 Query: 393 NEVVHAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLY 452 E+ +S + IITK DE GN+ +V + L + + GQ VP+DL VAN + Sbjct: 409 MEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSFFSIGQEVPDDLEVANSDF 468 Query: 453 LA 454 L Sbjct: 469 LV 470